Biology subjects

Ronholm, J.

Publications and source records attributed to Ronholm, J..

3 recordsLinked to original sources

bioRxiv2024

The Composition of the Bacterial Community in Raw Milk from Holstein Dairy Cattle Correlated with the Occurrence of Klebsiella pneumoniae Clinical Mastitis Infections

Klebsiella pneumoniae is a common, opportunistic bacterial pathogen that can cause severe clinical mastitis in dairy cattle. Optimizing the bovine udder microbiome to resist mastitis pathogens is a growing area of research; however, previous work has not examined which members of the mammary microbiome may have antagonistic interactions with K. pneumoniae. In this study, we collected quarter-level milk samples from Holstein dairy cows in Quebec, Canada every two weeks for 14 months and analyzed differences in the milk microbiome between samples that were collected from healthy quarters, quarters that developed subclinical mastitis, and quarters that experienced K. pneumoniae clinical mastitis (KP-CM) (n = 512 milk samples). The occurrence of subclinical mastitis did not cause significant differences in the alpha-diversity of the milk microbiome, nor did subclinical mastitis alter the interactions between taxa in the microbiome. However, the occurrence of KP-CM caused reductions in Shannon diversity in raw milk relative to healthy milk and altered the interactions between taxa. Specifically, K. pneumoniae showed negative interactions with the genus Aerococcus. The negative interactions between Aerococcus spp. and K. pneumoniae in the context of the bovine milk microbiome should be analyzed further.

microbiology↗

bioRxiv2024

The occurrence of Aerococcus urinaeequi and non-aureus Staphylococci in raw milk negatively correlates with Escherichia coli clinical mastitis

Escherichia coli is a common environmental pathogen associated with clinical mastitis (CM) in dairy cattle. There is an interest in optimizing the udder microbiome to increase the resistance of dairy cattle to E. coli CM; however, the details of which members of the healthy udder microbiota may play a role in antagonizing E. coli are unknown. In this study, we characterized the bacterial community composition in raw milk collected from quarters of lactating Holstein dairy cows that developed E. coli CM during lactation, including milk from both healthy and diseased quarters (n=1,172). The milk microbiome from infected quarters was compared before, during, and after CM. A combination of 16S rRNA gene amplicon and shotgun metagenomic sequencing were used generate datasets with a high level of both depth and breadth. The microbial diversity present in raw milk significantly decreased in quarters experiencing E. coli CM, indicating that E. coli displaces other members of the microbiome. However, the diversity recovered very rapidly after infection. Two genera: Staphylococcus, Aerococcus, and the family Oscillospiraceae were significantly more abundant in healthy quarters with low inflammation. Species of these genera: Staphylococcus auricularis, Staphylococcus haemolyticus, and Aerocussus urinaeequi were identified by shotgun metagenomics. Thus, these species are of interest for optimizing the microbiome to discourage E. coli colonization without triggering inflammation. ImportanceIn this study we show that E. coli outcompetes and displaces several members of the udder microbiome during CM, but that microbial diversity recovers post-infection. In milk from quarters which remained healthy, the community composition was often highly dominated by S. auricularis, S. haemolyticus, A. urinaeequi, and S. marcescens without corresponding increases in somatic cell count (SCC). Community dominance by these organisms, without inflammation, could indicate that these species could be potential prophylactics that could contribute to colonization resistance for the pathogen and prevent future instances of E. coli CM.

microbiology↗

bioRxiv2019

Presence of Legionella spp. in cooling towers: the role of microbial diversity, Pseudomonas, and continuous chlorine application.

Legionnaires Disease (LD) is a severe pneumonia caused by Legionella pneumophila. Cooling towers are the main source of L. pneumophila during large outbreaks. Colonization, survival, and proliferation of L. pneumophila in cooling towers are necessary for outbreaks to occur. These steps are affected by chemical and physical parameters of the cooling tower environment. We hypothesize that the bacterial community residing in the cooling tower could also affect the presence of L. pneumophila. A 16S rRNA targeted amplicon sequencing approach was used to study the bacterial community of cooling towers and its relationship with the Legionella spp. and L. pneumophila communities. The results indicated that the water source shaped the bacterial community of cooling towers. Several taxa were enriched and positively correlated with Legionella spp. and L. pneumophila. In contrast, Pseudomonas showed a strong negative correlation with Legionella spp. and several other genera. Most importantly, continuous chlorine application reduced microbial diversity and promoted the presence of Pseudomonas creating a non-permissive environment for Legionella spp. This suggests that disinfection strategies as well as the resident microbial population influences the ability of Legionella spp. to colonize cooling towers.

microbiology↗