Biology subjects

Ronget, V.

Publications and source records attributed to Ronget, V..

4 recordsLinked to original sources

bioRxiv2025

A MammaLian Demographic Database for comparative analyses of evolutionary biodemography: malddaba

The question of how individual age influences demographic transition rates, such as survival probabilities and reproduction rates, has long been a main question for demographers and evolutionary ecologists. This has resulted in the accumulation of studies estimating the age-specific demographic transition rates across the tree of life over the last few decades. Although this accumulation of studies has enabled comparative demographic analyses to be developed, such analyses remain difficult to perform because age-specific data are scattered across literature. Here, we present a new open-access database, malddaba, which compiles age-specific demographic rates for mammals in the wild from published information. Currently, the database encompasses 170 species from 250 publications, representing 428 age- and sex-specific survival series and 199 age- and sex-specific reproduction series. Each series is reported using a standardized approach aimed at facilitating the extraction and use of that dataset by anyone interested in comparative biology. We show how malddaba can be used to address a variety of questions, ranging from comparative ageing with the assessment of actuarial and reproductive senescence patterns in a wide diversity of mammals. We can also address questions related to comparative population dynamics. For this purpose, in addition to the raw demographic rate records, we were able to build 43 population-specific life tables using malddaba records, which allow demographic outputs to be estimated accurately, such as population growth rate and generation time for those species. The malddaba database will be regularly updated to keep adding new demographic estimates and bring a comprehensive and dynamic view of the diversity of demographic trajectories across mammals.

ecology↗

bioRxiv2025

Exploring the role of transposable elements to sex gap in longevity in Drosophila species

In Drosophila, like in many other animal species, females tend to live longer than males, a phenomenon known as sex gap in longevity (SGL). One possible explanation for this phenomenon could be related to the activity of transposable elements (TE), which may be present at higher levels in the heterogametic sex. TE activity is normally repressed by epigenetic mechanisms, but this regulation weakens with age. Sex chromosomes, such as the Y chromosome, are enriched in TEs, and age-related TE activity may therefore be more pronounced in older males than in older females, likely affecting longevity patterns. Using three Drosophila species, we show that SGL varies naturally among wild-type populations, reflecting both intra-and inter-species differences. Transcriptomic data revealed increased age-related TE expression in D. melanogaster and D. suzukii flies, but not in D. simulans. Moreover, we observed a higher number of upregulated TE copies in older males compared to older females across all the three species tested. Additionally, we detected an increase in TE-chimeric transcript generation in some aged samples, particularly in D. suzukii males. Finally, the replacement of the Y chromosome between strains with different SGL led to a progressive reduction in male lifespan and increased TE transcriptional release over generations, suggesting a Y chromosome important role in male longevity. Our work highlights the importance of investigating the role of TEs to better understand differences in longevity between sexes and across different species.

genomics↗

bioRxiv2021

The Kinship Matrix: Inferring the Kinship Structure of a Population from its Demography

The familial structure of a population and the relatedness of its individuals are determined by its demography. There is, however, no general method to infer kinship directly from the life-cycle of a structured population. Yet this question is central to fields such as ecology, evolution and conservation, especially in contexts where there is a strong interdependence between familial structure and population dynamics. Here, we give a general formula to compute, from any matrix population model, the expected number of arbitrary kin (sisters, nieces, cousins, etc) of a focal individual ego, structured by the class of ego and of its kin. Central to our approach are classic but little-used tools known as genealogical matrices. Our method can be used to obtain both individual-based and population-wide metrics of kinship, as we illustrate. It also makes it possible to analyze the sensitivity of the kinship structure to the traits implemented in the model.

ecology↗

bioRxiv2020

Is degree of sociality associated with reproductive senescence? A comparative analysis across birds and mammals

Our understanding on how widespread reproductive senescence is in the w ild and how the onset and rate of reproductive senescence vary among species in relation to life histories and lifestyles is currently limited. More specifically, whether the species-specific degree of sociality is linked to the occurrence, onset and rate of reproductive senescence remains unknown. Here, we investigate these questions using phylogenetic comparative analyses across 36 bird and 101 mammal species encompassing a wide array of life histories, lifestyles and social traits. We found that female reproductive senescence (1) is widespread and occurs with similar frequency (about two thirds) in birds and mammals; (2) occurs later in life and is slower in birds than in similar-sized mammals; (3) occurs later in life and is lower with an increasingly slower pace of life in both vertebrate classes; and (4) is only weakly associated, if any, with the degree of sociality in both classes after accounting for the effect of body size and pace of life. However, when removing the effect of species differences in pace of life, a higher degree of sociality was associated with later and weaker reproductive senescence in females, which suggests that degree of sociality is either indirectly related to reproductive senescence via the pace of life or simply a direct outcome of the pace of life. Subject Areasecology, evolution

evolutionary biology↗