Biology subjects

Rodrigues, F.

Publications and source records attributed to Rodrigues, F..

3 recordsLinked to original sources

bioRxiv2018

Insights on the assembly rules of a continent-wide multilayer network

Introductory paragraphHow are ecological systems assembled? Here, we aim to contribute to answering this question by harnessing the framework of a novel integrative hypothesis. We shed light on the assembly rules of a multilayer network formed by frugivory and nectarivory interactions between bats and plants in the Neotropics. Our results suggest that, at a large scale, phylogenetic trade-offs separate species into different layers and modules. At an intermediate scale, the modules are also shaped by geographic trade-offs. And at a small scale, the network shifts to a nested structure within its modules, probably as a consequence of resource breadth processes. Finally, once the topology of the network is shaped, morphological traits related to consuming fruits or nectar determine which species are central or peripheral. Our results help understand how different processes contribute to the assemblage of ecological systems at different scales, resulting in a compound topology.

ecology↗

bioRxiv2018

Survival and ice nucleation activity of Pseudomonas syringae strains exposed to simulated high-altitude atmospheric conditions

The epiphytic bacterium Pseudomonas syringae produces the most efficient and well-studied biological ice nuclei (IN) known. Bioaerosols containing these cells have been proposed to influence cloud glaciation, an important process in the initiation of precipitation. The presence of this species has been reported on rain, snow, and cloud water samples, but how these organisms can survive the harsh conditions present on the high atmosphere still remains to be better understood. In this study, the impact caused by this type of environment on P. syringae was assayed by measuring their viability and IN activity. Two strains, of the pathovars syringae and garcae, were compared to Escherichia coli. While UV-C radiation effectively inactivated these cells, the Pseudomonas were much more tolerant to UV-B. The P. syringae strains were also more resistant to \"environmental\" UV radiation from a solar simulator, composed of UV-A and UV-B. The response of their IN after long exposures to this radiation varied: only one strain suffered a relatively small 10-fold reduction in IN activity at -5 {degrees}C. Desiccation at different relative humidity values also affected the IN, but some activity at -5 {degrees}C was still maintained for all tests. The pathovar garcae tended to be more resistant to the stress treatments than the pathovar syringae, particularly to desiccation, though its IN were found to be more sensitive. Compared to E. coli, the P. syringae strains seemed relatively better adapted to survival under conditions present on the atmosphere at high altitudes.\n\nIMPORTANCEThe plant-associated bacterium Pseudomonas syringae produces on its outer membrane highly efficient ice nuclei which are able to induce the freezing of supercooled water. This ability has been linked to increased frost damaged on colonized leaves and also to the formation of ice in clouds, an important process leading to precipitation. P. syringae has been found on rain, snow, and cloud water samples, confirming its presence on the atmosphere. This study aimed to assess the survival of these cells and the maintenance of their ice nucleation activity under stressing conditions present in high altitudes: ultraviolet radiation and desiccation. P. syringae strains were shown to at least partially tolerate these factors, and their most efficient ice nuclei, while affected, could still be detected after all experiments.

microbiology↗

bioRxiv2017

Drivers of genetic diversity in secondary metabolic gene clusters in a fungal population

Filamentous fungi produce a diverse array of secondary metabolites (SMs) critical for defense, virulence, and communication. The metabolic pathways that produce SMs are found in contiguous gene clusters in fungal genomes, an atypical arrangement for metabolic pathways in other eukaryotes. Comparative studies of filamentous fungal species have shown that SM gene clusters are often either highly divergent or uniquely present in one or a handful of species, hampering efforts to determine the genetic basis and evolutionary drivers of SM gene cluster divergence. Here we examined SM variation in 66 cosmopolitan strains of a single species, the opportunistic human pathogen Aspergillus fumigatus. Investigation of genome-wide within-species variation revealed five general types of variation in SM gene clusters: non-functional gene polymorphisms, gene gain and loss polymorphisms, whole cluster gain and loss polymorphisms, allelic polymorphisms where different alleles corresponded to distinct, non-homologous clusters, and location polymorphisms in which a cluster was found to differ in its genomic location across strains. These polymorphisms affect the function of representative A. fumigatus SM gene clusters, such as those involved in the production of gliotoxin, fumigaclavine, and helvolic acid, as well as the function of clusters with undefined products. In addition to enabling the identification of polymorphisms whose detection requires extensive genome-wide synteny conservation (e.g., mobile gene clusters and non-homologous cluster alleles), our approach also implicated multiple underlying genetic drivers, including point mutations, recombination, genomic deletion and insertion events, as well as horizontal gene transfer from distant fungi. Finally, most of the variants that we uncover within A. fumigatus have been previously hypothesized to contribute to SM gene cluster diversity across entire fungal classes and phyla. We suggest that the drivers of genetic diversity operating within a fungal species shown here are sufficient to explain SM cluster macroevolutionary patterns.

genomics↗