Biology subjects

Rikhy, R.

Publications and source records attributed to Rikhy, R..

8 recordsLinked to original sources

bioRxiv2026

Dynamic microtubules drive yolk-cytoplasm segregation in the syncytial Drosophila embryo

Yolk-cytoplasm segregation is among the earliest spatial organization events in the developing embryo of many oviparous animals. The segregation process is intimately linked to early embryonic cleavage and pattern formation, and exhibits a wide range of spatial and temporal diversity. However, the underlying cytoskeletal mechanism remains largely unknown, except for a small number of species. Using quantitative live imaging, we investigated yolk segregation in the Drosophila embryo during the syncytial nuclear cycles 11-14. We find that the yolk vesicles move progressively inward in spatial and temporal coordination with the inward expanding microtubule networks that are nucleated from centrosomes positioned at the cortex, whereas cortical actin meshwork remains spatially restricted. Using the gnu RNAi embryo to decouple nuclear migration and division from cytoskeletal dynamics, we establish causality with targeted pharmacological disruption and find that microtubule dynamics is required for yolk segregation, while depolymerization of actin has no discernible effect. In support of a mechanism of growth-propelled passive displacement, microtubule plus end comets come in apparent contact with yolk vesicles, and injected, inert microbeads are displaced towards the embryo center presumably by the same pushing force. These findings identify microtubule polymerization as a predominant driver of yolk-cytoplasm segregation in Drosophila and suggest that diverse cytoskeletal mechanisms evolved to accomplish this crucial reorganization process

developmental biology↗

bioRxiv2025

Scaling of the Bicoid morphogen gradient: the effect of state dependent diffusion

The mechanisms underlying the scaling of the Bicoid morphogen gradient in Drosophila with the embryo size is not clearly understood. We propose a model with a spatially varying diffusion coefficient along the anterior-posterior axis, that is proportional to the nearly periodic spatial distribution of the nucleo-cytoplasmic domains and alternating between regions of fast and slow diffusion. We postulate that for specific interpretation of the heterogeneous environment, where the space available for free diffusion within an energid is assumed to be proportional to the embryo size, a change in the embryo size can lead to a size-dependent scaling of the gradient lengthscale. We further study a two component model with slow and fast diffusing Bicoid, and identify this model to be equivalent to the heterogeneous diffusion model further postulating that the fast-state occupancy which is a measure of the fraction of time spent in the fast diffusing state, should also scale with the embryo size via the energid size. Finally, we incorporate nuclear shuttling into our model to understand the effect of shuttling on the gradient lengthscale and scaling with embryo size. We argue that for the particular case where the degradation within the nucleus is low, nuclear shuttling does not perturb the Bicoid gradient. Our study suggests that scaling of the gradient length scale is possible due to spatial heterogeneity and does not depend on nuclear trapping as suggested previously.

developmental biology↗

bioRxiv2025

Mitochondrial fission regulates ROS for ventral furrow formation in Drosophila gastrulation

Mitochondrial dynamics are vital for embryogenesis, but their role in morphogenesis is largely unexplored. In this study, we elucidate the role of mitochondrial dynamics and function in regulating apical constriction at the ventral furrow in Drosophila gastrulation. We find that spatiotemporal redistribution of mitochondria from basal to apically constricting regions is coincident with Myosin II accumulation in ventral epithelial cells. This apical enrichment depends on intact microtubules and is regulated by Dorsal/NFkb signaling pathway. Embryos expressing mitochondrial fission protein, Drp1 mutants, contain larger, basally accumulated mitochondria, decreased apical constriction and ventral furrow defects. Transcriptomic and proteomic profiling of Drp1 mutants shows no change in Dorsal signaling, but an upregulation of antioxidant enzymes, decreased respiratory complexes, and reduced reactive oxygen species (ROS), confirming loss of mitochondrial activity and a reduced environment. Depleting mitochondrial SOD2 in Drp1 mutant embryos restores levels of antioxidant proteins and increases ROS, leading to an oxidized environment. These embryos also show rescue in apical mitochondrial migration and Myosin II accumulation, thereby enabling proper ventral furrow formation. Our study reveals the functional importance of localized mitochondrial dynamics, regulated by the Dorsal signaling pathway, and mitochondrial activity in a spatiotemporal manner for apical constriction during gastrulation.

developmental biology↗

bioRxiv2025

Electron transport chain complex I and mitochondrial fusion regulate ROS for differentiation in Drosophila neural stem cells

Mitochondrial activity and dynamics play crucial roles in regulating neuronal differentiation. Neural stem cells (NSCs) or neuroblasts in Drosophila require the regulation of mitochondrial fusion, along with the activity of the electron transport chain (ETC), to meet the metabolic demands of differentiation. However, the mechanisms by which mitochondrial fusion and activity together regulate NSC differentiation are not well understood. We investigated the relationship between mitochondrial fusion, and ETC complex I activity during Drosophila neuroblast differentiation. We found that depletion of complex I subunits did not affect the number of type II neuroblasts but reduced their proliferation, thereby decreasing the numbers of mature intermediate precursor cells (mINPs), ganglion mother cells (GMCs), and neurons in each lineage. Complex I depletion decreased the mitochondrial membrane potential and cristae numbers, and increased mitochondrial fragmentation and ROS. Increased ROS resulting from the depletion of antioxidant enzymes also led to a decrease in mINPs, GMCs, and neurons in each type II neuroblast lineage. Both complex I and antioxidant protein depletion led to delayed G1/S transition and decreased nuclear cyclin E levels. Interestingly, the defects in proliferation, differentiation, and ROS in complex I and anti-oxidant protein depleted neuroblasts could be restored by fused mitochondrial morphology obtained through additional depletion of the fission protein Drp1. Further, overexpression of anti-oxidant proteins could alleviate the ROS and rescue the differentiation defect in complex I depleted type II neuroblasts. Together, this study reveals a role for complex I and mitochondrial fusion in restricting ROS for differentiation in Drosophila neuroblasts. Significance statementThe electron transport chain complex I regulates differentiation in the Drosophila type II neuroblast lineage. Complex I and anti-oxidant scavenger protein depletion lead to mitochondrial fragmentation and an increase in ROS, thereby affecting the G1/S phase transition and decreasing the formation of lineage cells. Mitochondrial fusion induced by depletion of mitochondrial fission protein Drp1 in complex I and anti-oxidant protein depleted type II neuroblasts leads to suppression of the differentiation defects. This study confirms a crucial role of mitochondrial fusion in restricting ROS for appropriate division and differentiation in the type II neuroblast lineage in Drosophila.

developmental biology↗

bioRxiv2023

Mitochondrial morphology dynamics and ROS regulate apical polarity and differentiation in Drosophila follicle cells

Mitochondrial morphology dynamics regulate signaling pathways during epithelial cell formation and differentiation. The mitochondrial fission protein Drp1 affects the appropriate activation of EGFR and Notch signaling-driven differentiation of posterior follicle cells in Drosophila oogenesis. The mechanisms by which Drp1 regulates epithelial polarity during differentiation are not known. In this study, we show that Drp1 depleted follicle cells are constricted in early stages and present in multiple layers at later stages with decreased levels of apical polarity protein aPKC. This defect is suppressed by additional depletion of mitochondrial fusion protein Opa1. Opa1 depletion leads to mitochondrial fragmentation and increased reactive oxygen species (ROS) in follicle cells. We find that increasing ROS by depleting the ROS scavengers, mitochondrial SOD2, and catalase also leads to mitochondrial fragmentation. Further, the loss of Opa1, SOD2, and catalase partially restores the defects in epithelial polarity and aPKC along with EGFR and Notch signaling in Drp1 depleted follicle cells. Our results show a crucial interaction between mitochondrial morphology, ROS generation, and epithelial cell polarity formation during the differentiation of follicle epithelial cells in Drosophila oogenesis. Summary statementMitochondrial fission protein Drp1 regulates epithelial follicle cell differentiation in Drosophila oogenesis. Increasing ROS and mitochondrial fragmentation suppresses the defects in epithelial polarity, and differentiation in Drp1 depleted follicle cells.

developmental biology↗

bioRxiv2021

Mitochondrial fusion regulates proliferation and differentiation in the type II neuroblast lineage in Drosophila

Optimal mitochondrial function determined by mitochondrial dynamics, morphology and activity is coupled to stem cell differentiation and organism development. However, the mechanisms of interaction of signaling pathways with mitochondrial morphology and activity are not completely understood. We assessed the role of mitochondrial fusion and fission in differentiation of neural stem cells called neuroblasts (NB) in the Drosophila brain. Depletion of mitochondrial inner membrane fusion protein Opa1 and mitochondrial outer membrane protein Marf in the Drosophila type II neuroblast lineage led to mitochondrial fragmentation and loss of activity. Opa1 and Marf depletion did not affect the numbers and polarity of type II neuroblasts but led to a decrease in proliferation and differentiation of cells in the lineage. On the contrary, loss of mitochondrial fission protein Drp1 led to mitochondrial fusion but did not show defects in proliferation and differentiation. Depletion of Drp1 along with Opa1 or Marf also led to mitochondrial fusion and suppressed fragmentation, loss of mitochondrial activity, proliferation and differentiation in the type II NB lineage. We found that Notch signaling depletion via the canonical pathway showed mitochondrial fragmentation and loss of differentiation similar to Opa1 mutants. An increase in Notch signaling required mitochondrial fusion for NB proliferation. Further, Drp1 mutants in combination with Notch depletion showed mitochondrial fusion and drove differentiation in the lineage suggesting that fused mitochondria can influence Notch signaling driven differentiation in the type II NB lineage. Our results implicate a crosstalk between Notch signalling, mitochondrial activity and mitochondrial fusion as an essential step in type II NB differentiation.

developmental biology↗

bioRxiv2019

Polarity protein distribution on the metaphase furrow regulates hexagon dominated plasma membrane organization in syncytial Drosophila embryos

Epithelial cells have a polarised distribution of protein complexes on the lateral membrane and are present as a polygonal array dominated by hexagons. Metazoan embryogenesis enables the study of temporal formation of the polygonal array and mechanisms that regulate its distribution. The plasma membrane of the syncytial Drosophila blastoderm embryo is organized as a polygonal array during cortical division cycles with an apical membrane and lateral furrow in between adjacent nuclei. We find that polygonal plasma membrane organization arises in syncytial division cycle 11 and hexagon dominance occurs with increase in furrow length in cycle 12. This is coincident with DE-cadherin and Bazooka enrichment at edges and the septin, Peanut enrichment at vertices of the base of the furrow. DE-cadherin depletion leads to loss of hexagon dominance. Bazooka and Peanut depletion leads to a delay in occurrence of hexagon dominance from nuclear cycle 12 to 13. Hexagon dominance in Bazooka and Peanut mutants occurs with furrow extension and correlates with increase in DE-cadherin in syncytial cycle 13. We conclude that a change in polarity complex distribution leads to loss of furrow stability thereby changing the polygonal organization of the blastoderm embryo.\n\nHighlight Summary for TOCMetazoan embryogenesis starts with the formation of polygonal epithelial-like cells. We show that hexagon dominance in polygonal epithelial-like plasma membrane organization occurs in nuclear cycle 12 in the syncytial blastoderm Drosophila embryo. DE-cadherin and Bazooka distribution along the lateral furrow regulates this hexagon dominance.

developmental biology↗

bioRxiv2019

Cyto-architecture constrains a photoactivation induced tubulin gradient in the syncytial Drosophila embryo

Drosophila embryogenesis begins with nuclear division in a common cytoplasm forming a syncytial cell. Morphogen gradient molecules spread across nucleo-cytoplasmic domains to pattern the body axis of the syncytial embryo. The diffusion of molecules across the syncytial nucleo-cytoplasmic domains is potentially constrained by association with the components of cellular architecture, however the extent of restriction has not been examined so far. Here we use photoactivation (PA) to generate a source of cytoplasmic or cytoskeletal molecules in order to monitor the kinetics of their spread in the syncytial Drosophila embryo. Photoactivated PA-GFP and PA-GFP-Tubulin within a fixed anterior area diffused along the antero-posterior axis. These molecules were enriched in cortical cytoplasm above the yolk-filled center suggesting that the cortical cytoplasm is phase separated from the yolk-filled center. The length scales of diffusion were extracted using exponential fits under steady state assumptions. PA-GFP spread to greater distance as compared to PA-GFP-Tubulin. Both gradients were steeper and more restricted when generated in the center of the embryo probably due to a higher density of nucleo-cytoplasmic domains. The length scale of diffusion for PA-GFP-Tubulin gradient increased in mutant embryos containing short plasma membrane furrows and disrupted tubulin cytoskeleton. The PA-GFP gradient shape was unaffected by cyto-architecture perturbation. Taken together, these data show that PA-GFP-Tubulin gradient is largely restricted by its incorporation in the microtubule network and intact plasma membrane furrows. This photoactivation based analysis of protein spread across allows for interpretation of the dependence of gradient formation on the syncytial cyto-architecture.

developmental biology↗