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Riffel, T.

Publications and source records attributed to Riffel, T..

2 recordsLinked to original sources

Monitoring terrestrial vertebrates with airborne DNA in the Luangwa Valley, Zambia

Vertebrates play vital roles in maintaining ecosystem processes and services and serve as valuable indicators of environmental health, making them an important target for monitoring and conservation efforts. Within the environmental DNA (eDNA) toolbox, airborne environmental DNA has recently emerged as a novel approach for vertebrate monitoring. In this study, we evaluated on-site airborne eDNA for terrestrial vertebrate monitoring in the Luangwa Valley savanna in Zambia, which represents a major biodiversity stronghold of largely intact wilderness and with high levels of vertebrate diversity and endemism. Six air samplers were deployed over four days alongside camera traps for validation, and samples were processed using a mobile molecular laboratory. In total, 120 terrestrial vertebrate taxa were detected with airborne eDNA, including 16 of the 17 taxa recorded by camera traps, demonstrating high sensitivity. Notably, 72.5% of taxa were detected on the first day, and a single sampler recovered 61.7% of all taxa; the taxonomic richness incrementally increased with extended sampling efforts, but the magnitude of these increases declined progressively. The detected taxa spanned the four terrestrial vertebrate classes and encompassed a wide range of ecological traits. These results show that airborne eDNA can quickly recover a substantial and representative fraction of local vertebrate diversity within a short sampling window, while extended sampling can improve detection of less common taxa. Despite existing limitations, our findings support the use of airborne eDNA as an efficient and scalable complementary tool for community-level biodiversity assessments in terrestrial ecosystems such as Zambezian savannas.

ecology↗

Evaluation of nanopore sequencing for increasing accessibility of eDNA studies in biodiverse countries

Biodiversity loss is a global challenge of the 21st century. Environmental DNA (eDNA)-based metabarcoding offers a cost- and time-efficient alternative to conventional biodiversity surveys, enabling detection of rare, cryptic, and elusive species from environmental samples. However, limited access to genomic technologies restricts the application of eDNA metabarcoding in highly biodiverse remote regions and low- and middle-income countries (LMICs). Here, we directly compared the latest portable nanopore sequencing methods with established Illumina sequencing for vertebrate eDNA metabarcoding of Zambian water samples. Our results show that due to recent improvements in sequencing chemistry and optimized basecalling, nanopore sequencing data can recapitulate or even surpass established protocols, demonstrating the feasibility of in situ biodiversity assessments. eDNA- and camera trap-based species detections had minimal overlap in species detections, suggesting a complementary rather than substituting application of these biodiversity monitoring technologies. We finally demonstrate that our entire eDNA workflow can be successfully implemented in a mobile laboratory under remote field conditions by completing all steps--from sample collection to data analysis--within the Luambe National Park in Zambia. This approach has important implications for capacity building in LMICs and for overcoming limitations associated with sample export.

molecular biology↗