bioRxiv Science⌕ Search

Biology subjects

Ribera d'Alcala, M.

Publications and source records attributed to Ribera d'Alcala, M..

3 recordsLinked to original sources

Particle-based representation of phytoplankton modulates emergent coexistence and biogeography in a model ocean

Phytoplankton communities sustain the marine food web through primary productivity. These communities sustain a high diversity of species, all of which must draw from the same finite nutrient supply. The mechanisms driving phytoplankton biogeography and succession, as well as those enabling high diversity, remain incompletely understood. Here, we compare emerging patterns of biogeography, richness, and diversity in a size-structured phytoplankton community as it is advected and diffused within an idealized North Atlantic double-gyre circulation, using both Eulerian and Lagrangian (particle-based) modeling (PBM) frameworks. When a sufficient number of particles is modeled, the PBM, which resolves mortality at the particle level, produces stronger seasonal variability in biomass in the northern gyre and less stable and higher biomass in the southern gyre, while reproducing large-scale chlorophyll patterns observed by satellite. These contrasting dynamics are accompanied by distinct regional diversity patterns: local richness and diversity are generally higher in the PBM than in the Eulerian model in the northern gyre, with differences depending on the mortality threshold, whereas in the oligotrophic southern gyre, PBM local richness increases with particle number, while Eulerian richness is more sensitive to the mortality threshold. The PBM also produces a dynamic and emergent biogeographical structure that is more robust to the mortality threshold than the Eulerian model. Finally, Lagrangian variability in environmental conditions experienced by particles shows a stronger impact compared to the local Eulerian variability in the Northern gyre and stresses variable sensitivity to environmental histories. Together, these results suggest that the discrete representation of biomass fundamentally alters mortality, biogeography, and emergent coexistence patterns in model plankton ecosystems.

ecology↗

Diatom phytochromes integrate the entire visible light spectra for photosensing in marine environments

Aquatic life is strongly structured by light gradients, with gradual decrease in light intensity and differential attenuation of sunlight wavelengths with depth. How phytoplankton perceive these variations is unknown. By providing the first in vivo quantitative assessment of the action of marine diatom phytochrome photoreceptors (DPH), we show that they efficiently trigger photoreversible responses across the entire light spectrum, unlike current models of phytochrome photosensing. The distribution and activity of DPHs in the environment indicate that they are extremely sensitive detectors of spectral light variations related to depth and optical properties of the water column in temperate and polar oceans, revealing a completely novel view of how light is perceived in the marine environment.

plant biology↗

Distinctive diffusive properties of swimming planktonic copepods in different environmental conditions.

Suspensions of small planktonic copepods represent a special category in the realm of active matter, as their size falls within the range of colloids, while their motion is so complex that it cannot be rationalized according to basic self-propelled particle models. Indeed, the wide range of individual variability and swimming patterns resemble the behaviour of much larger animals. By analysing hundreds of three dimensional trajectories of the planktonic copepod Clausocalanus furcatus we investigate the possibility of detecting how the motion of this species is affected by different external conditions, such as the presence of food and the effect of gravity. While this goal is hardly achievable by direct inspection of single organism trajectories, we show that this is possible by focussing on simple average metrics commonly used to characterize colloidal suspensions, such as the mean square displacement and the dynamic correlation functions. We find that the presence of food leads to the onset of a clear localization that separates a short-time ballistic from a long-time diffusive regime. Such a benchmark reflects the tendency of C. furcatus to remain temporally feeding in a limited space and disappears when food is absent. Localization is clearly evident in the horizontal plane, but is negligible in the vertical direction, due to the effect of gravity. Our results suggest that simple average descriptors may provide concise and useful information on the swimming properties of planktonic copepods, even though single organism behaviours are strongly heterogeneous.

biophysics↗