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Ribeiro, I.

Publications and source records attributed to Ribeiro, I..

2 recordsLinked to original sources

Remotely sensed indicators and open-access biodiversity data to assess bird diversity patterns in Mediterranean rural landscapes.

Changes in ecosystem area are often used to assess human impacts on habitats and estimate biodiversity change. However, because species respond to structural changes at fine spatial scales the use of area alone may not capture all relevant changes. Operational costs limit the assessment of biodiversity change at a simultaneously fine spatial resolution and large scales. The development of cost-effective and expedite methods to monitor biodiversity change is therefore required. We use open access satellite imagery and biodiversity data to investigate the importance of variables of habitat extent and structure in explaining species richness and community dissimilarity of forest and open-land birds at the regional scale. Moreover, because Mediterranean landscapes are subject to seasonal dynamics, we explore the indicator value of remotely sensed variables measured in spring and summer. A large-scale dataset of bird occurrence data, including 8042 observations and 78 species, distributed by 40 landscape-sized cells, was assembled from GBIF after controlling for data quality. We found that summer satellite imagery, when the green perennial vegetation is more apparent, is particularly suited to model the diversity patterns of forest species, because distribution of tree cover in the landscape is well captured. Summer data is also useful to monitor the perennial elements that shape landscape structure and the habitat of open-land species. Specifically, mean NDVI and a second-order NDVI texture variable, were found to be good indicators of forest and open-land habitats, respectively. The use of spring imagery appears to be useful to monitor habitat structure within open-land habitat patches. Overall, NDVI texture measures were found to be good predictors of bird diversity patterns at large scales. Also, we were able to successfully conduct a regional scale analysis using open-access data, which illustrates their potential to inform large scale biodiversity monitoring.

ecology

Real Time PCR for the Evaluation of Treatment Response in Clinical Trials of Adult Chronic Chagas Disease: Usefulness of Serial Blood Sampling and qPCR Replicates.

This work evaluated a serial blood sampling procedure to enhance the sensitivity of duplex real time PCR (qPCR) for baseline detection and quantification of parasitic loads and post-treatment identification of failure in the context of clinical trials for treatment of chronic Chagas disease, namely DNDi-CH-E1224-001 (NCT01489228) and MSF-DNDi PCR sampling optimization study (NCT01678599). Patients from Cochabamba (N= 294), Tarija (N = 257), and Aiquile (N= 220) were enrolled. Three serial blood samples were collected at each time-point, and qPCR triplicates were tested per sample. The first two samples were collected during the same day and the third one seven days later.\n\nA patient was considered PCR positive if at least one qPCR replicate was detectable. Cumulative results of multiple samples and qPCR replicates enhanced the proportion of pre-treatment sample positivity from 54.8 to 76.2%, 59.5 to 77.8%, and 73.5 to 90.2% in Cochabamba, Tarija, and Aiquile cohorts, respectively and increased cumulative detection of treatment failure from 72.9 to 91.7%, 77.8 to 88.9%, and 42.9 to 69.1% for E1224 low, short, and high dosage regimes, respectively; and from 4.6 to 15.9% and 9.5 to 32.1% for the benznidazole (BZN) arm in the DNDi-CH-E1224-001 and MSF-DNDi studies, respectively. The monitoring of patients treated with placebo in the DNDi-CH-E1224-001 trial revealed fluctuations in parasitic loads and occasional non-detectable results. This serial sampling strategy enhanced PCR sensitivity to detecting treatment failure during follow-up and has the potential for improving recruitment capacity in Chagas disease trials which require an initial positive qPCR result for patient admission.

microbiology