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Redmond, A. K.

Publications and source records attributed to Redmond, A. K..

2 recordsLinked to original sources

Acoelomorph flatworm monophyly is a severe long-branch attraction artefact obscuring a clade of Acoela and Xenoturbellida

Acoelomorpha is a broadly accepted clade of bilaterian animals made up of the fast-evolving, morphologically simple, mainly marine flatworm lineages Acoela and Nemertodermatida. Phylogenomic studies support Acoelomorphas close relationship with the slowly evolving and similarly simplistic Xenoturbella, together forming the phylum Xenacoelomorpha. The phylogenetic placement of Xenacoelomorpha amongst bilaterians is controversial, with some studies supporting Xenacoelomorpha as the sister group to all other bilaterians, implying that their simplicity may be representative of early bilaterians. Others propose that this placement is a long branch attraction artefact resulting from the fast-evolving Acoelomorpha, and instead suggest that they are the secondarily simplified sister group of the deuterostome clade Ambulacraria. Perhaps as a result of this debate, internal xenacoelomorph relationships have been somewhat overlooked at a phylogenomic scale. Here, I employ both empirical and simulation approaches to detect and overcome phylogenomic errors to reassess the relationship between Xenoturbella and the fast evolving acoelomorph flatworms. I conclude that subphylum Acoelomorpha is a long-branch attraction artefact obscuring a previously undiscovered clade comprising Xenoturbella and Acoela, for which I propose the name Xenacoela. These analyses are also consistent with the Nephrozoa hypothesis deriving from systematic error, and instead generally favour a close, but unclear, relationship of Xenacoelomorpha with deuterostomes. This study provides a template for future efforts aimed at discovering and correcting unrecognised long-branch attraction artefacts throughout the tree of life.

evolutionary biology↗

Extensive lineage-specific rediploidisation masks shared whole genome duplication in the sturgeon-paddlefish ancestor

Whole genome duplication (WGD) is a dramatic evolutionary event generating many new genes and which may play a role in survival through mass extinctions. Paddlefish and sturgeon are sister lineages that both show genomic evidence for ancient WGD. Until now this has been interpreted as two independent WGD events due to a preponderance of duplicate genes with independent histories. Here we show that although there is indeed a plurality of apparently independent gene duplications, these derive from a shared genome duplication event occurring close to the Permian-Triassic mass extinction period, followed by a prolonged process of reversion to stable diploid inheritance (rediploidisation). We show that the sharing of this WGD is masked by the fact that paddlefish and sturgeon lineage divergence occurred before rediploidisation had proceeded even half-way. Thus, for most genes the resolution to diploidy was lineage-specific. Because genes are only truly duplicated once diploid inheritance is established, the paddlefish and sturgeon genomes are a mosaic of shared and non-shared gene duplications resulting from a shared genome duplication event. This is the first time that lineage-specific resolution of genes from a common WGD event has been shown to affect such a large proportion of the genome.

evolutionary biology↗