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Rangarajan, N.

Publications and source records attributed to Rangarajan, N..

2 recordsLinked to original sources

One-to-one mapping between deep network units and real neurons uncovers a visual population code for social behavior

The rich variety of behaviors observed in animals arises through the complex interplay between sensory processing and motor control. To understand these sensorimotor transformations, it is useful to build models that predict not only neural responses to sensory input [1, 2, 3, 4, 5] but also how each neuron causally contributes to behavior [6, 7]. Here we demonstrate a novel modeling approach to identify a one-to-one mapping between internal units in a deep neural network and real neurons by predicting the behavioral changes arising from systematic perturbations of more than a dozen neuron types. A key ingredient we introduce is "knockout training", which involves perturb-ing the network during training to match the perturbations of the real neurons during behavioral experiments. We apply this approach to model the sensorimotor transformation of Drosophila melanogaster males during a com-plex, visually-guided social behavior [8, 9, 10]. The visual projection neurons at the interface between the eye and brain form a set of discrete channels, suggesting each channel encodes a single visual feature [11, 12, 13]. Our model reaches a different conclusion: The visual projection neurons form a highly distributed population code that collectively sculpts social behavior. Overall, our framework consolidates behavioral effects elicited from various neural perturbations into a single, unified model, providing a detailed map from stimulus to neuron to behavior.

neuroscience↗

Potassium starvation induces autophagy in yeast

ABSTRACTAutophagy is a conserved process that recycles cellular contents to promote survival. Although nitrogen starvation is the canonical inducer of autophagy, recent studies have revealed several other nutrients important to this process. In this study, we used a quantitative, high-throughput assay to identify potassium starvation as a new and potent inducer of autophagy. We found that potassium-dependent autophagy requires the core pathway kinases Atg1, Atg5, Vps34, as well as other components of Phosphatidylinositol 3-kinase Complex I. Transmission electron microscopy revealed abundant autophagosome formation in response to both stimuli. RNA sequencing indicated distinct transcriptional responses – nitrogen affects transport of ions such as copper while potassium targets the organization of other cellular components. Thus, nitrogen and potassium share the ability to influence metabolic supply and demand but do so in different ways. Both inputs promote catabolism through bulk autophagy, but inhibit cellular anabolism through distinct mechanisms.Competing Interest StatementThe authors have declared no competing interest.ABBREVIATIONSPIPhosphatidylinositolATGAutophagy-related geneSCDSynthetic Complete medium with DextroseYNBYeast Nitrogen BaseTEMTransmission Electron MicroscopyMAPKMitogen-Activated Protein KinaseDEGDifferentially Expressed Gene.View Full Text

biochemistry↗