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Rafiei, F.

Publications and source records attributed to Rafiei, F..

5 recordsLinked to original sources

Mustard-DB: The Database of Cellular, Molecular, and Phenotypic Data in Sulphur Mustard Exposure

1The significance of sulfur mustard as a chemical hazard cannot be overstated. Its potential for causing severe morbidity and long-term health issues makes understanding its effects crucial. Mustard-DB is an essential database that consolidates extensive cellular, molecular, and clinical data on sulfur mustard exposure. It stands as a critical tool for the scientific community, shedding light on the pathophysiological mechanisms and potential therapeutic interventions for those affected by this noxious agent. The database provides a detailed account of the acute and chronic cellular responses, and clinical outcomes associated with sulfur mustard in in vitro, ex vivo and in vivo studies. By offering a multidimensional view of the data, Mustard-DB enables a comprehensive understanding of the agents impact on human health. This manuscript presents the development, structure, and application of Mustard-DB (www.Mustard-DB.com), emphasizing its role in enhancing our response to chemical threats and improving patient outcomes.

bioinformatics↗

The timing of confidence computations in human prefrontal cortex

Knowing when confidence computations take place is critical for building mechanistic understanding of the neural and computational bases of metacognition. Yet, even though substantial amount of research has focused on revealing the neural correlates and computations underlying human confidence judgments, very little is known about the timing of confidence computations. Subjects judged the orientation of a briefly presented visual stimulus and provided a confidence rating regarding the accuracy of their decision. We delivered single pulses of transcranial magnetic stimulation (TMS) at different times after stimulus presentation. TMS was delivered to either dorsolateral prefrontal cortex (DLPFC) in the experimental group or to vertex in the control group. We found that TMS to DLPFC, but not to vertex, led to increased confidence in the absence of changes to accuracy or metacognitive ability. Critically, equivalent levels of confidence increase occurred for TMS delivered between 200 and 500 ms after stimulus presentation. These results suggest that confidence computations occur during a broad window that begins before the perceptual decision has been fully made and thus provide important constraints for theories of confidence generation.

neuroscience↗

RTNet: A neural network that exhibits the signatures of human perceptual decision making

Convolutional neural networks show promise as models of biological vision. However, their decision behavior, including the facts that they are deterministic and use equal number of computations for easy and difficult stimuli, differs markedly from human decision-making, thus limiting their applicability as models of human perceptual behavior. Here we develop a new neural network, RTNet, that generates stochastic decisions and human-like response time (RT) distributions. We further performed comprehensive tests that showed RTNet reproduces all foundational features of human accuracy, RT, and confidence and does so better than all current alternatives. To test RTNets ability to predict human behavior on novel images, we collected accuracy, RT, and confidence data from 60 human subjects performing a digit discrimination task. We found that the accuracy, RT, and confidence produced by RTNet for individual novel images correlated with the same quantities produced by human subjects. Critically, human subjects who were more similar to the average human performance were also found to be closer to RTNets predictions, suggesting that RTNet successfully captured average human behavior. Overall, RTNet is a promising model of human response times that exhibits the critical signatures of perceptual decision making.

neuroscience↗

TMS alters multivoxel patterns in the absence of overall activity changes

Transcranial magnetic stimulation (TMS) has become one of the major tools for establishing the causal role of specific brain regions in perceptual, motor, and cognitive processes. Nevertheless, a persistent limitation of the technique is the lack of clarity regarding its precise effects on neural activity. Here, we examined the effects of TMS intensity and frequency on concurrently recorded blood-oxygen level-dependent (BOLD) signals at the site of stimulation. In two experiments, we delivered TMS to the dorsolateral prefrontal cortex in human subjects of both sexes. In Experiment 1, we delivered a series of pulses at high (100% of motor threshold) or low (50% of motor threshold) intensity, whereas in Experiment 2, we always used high intensity but delivered stimulation at four different frequencies (5, 8.33, 12.5, and 25 Hz). We found that the TMS intensity and frequency could be reliably decoded using multivariate analysis techniques even though TMS had no effect on overall BOLD activity at the site of stimulation in either experiment. These results provide important insight into the mechanisms through which TMS influences neural activity. SignificanceTranscranial magnetic stimulation (TMS) is a promising tool for the treatment of a number of neuropsychiatric disorders. However, its effectiveness is still impeded by an incomplete understanding of its neural effects. One fundamental unresolved issue is whether TMS leads to local changes in overall neural activity in the absence of a task. Here we performed two experiments where TMS was delivered inside an MRI scanner while brain activity was continuously monitored. We found converging evidence for the notion that TMS affects the pattern of local activity changes but does not lead to an overall increase in activity. These results help clarify the mechanisms of how TMS affects local neural activity.

neuroscience↗