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Radhakrishnan, S.

Publications and source records attributed to Radhakrishnan, S..

2 recordsLinked to original sources

Addition of soluble fiber in low fat purified diets improves gut and metabolic health compared to traditional AIN diets

BackgroundPurified diets (PDs) contain refined ingredients with one main nutrient, allowing for greater control relative to grain-based diets (GBDs), which contain unrefined grains and animal byproducts. Traditional PDs like the AIN-76A (76A) and AIN-93G (93G) can negatively impact metabolic and gut health when fed long-term, in part due to lower total fiber, no soluble fiber, and higher sucrose content. ObjectiveTwo studies were conducted to determine how PDs with reduced sucrose and increased fiber (soluble and insoluble) influence metabolic and gut health in mice compared to traditional AIN PDs or GBDs. MethodsIn study 1, C57Bl/6N mice consumed a GBD (5002), 76A, 93G, or 2 Open standard PDs (OSDs) with reduced sucrose and higher fiber for 88 days. Body composition and metabolic parameters were assessed. In study 2, C57Bl/6N mice consumed either 2 GBDs (5001 or 5002) or OSDs with different types/levels of fiber for 14 days. Microbiome alterations and predicted functional metagenomic changes were measured. ResultsOSD marginally influenced body weight and adiposity, but improved glucose tolerance relative to 93G (p = 0.0131) and 76A (p = 0.0014). Cecal and colonic weights were lower in mice fed cellulose-based PDs compared to those fed GBDs and soluble fiber PDs. Soluble fiber diets reduced alpha diversity and showed similar beta diversity, which differed from cellulose fed PDs and GBDs. Certain genera associated with improved gut health such as Bifidobacteria and Akkermansia were significantly elevated by soluble fibers PDs (p[≤]0.01). Some metabolic pathways related to carbohydrate and fatty acid metabolism were affected by PDs. ConclusionPDs formulated with lower sucrose and increased fiber content, particularly soluble fiber, blunted elevations in metabolic parameters and favorably impacted microbiota and metagenome in C57BL/6N mice.

physiology↗

Unearthing the genes of plant-beneficial marine yeast - Wickerhamomyces anomalus strain MSD1

The de novo genome of unique marine yeast, Wickerhamomyces anomalus isolated from seaweed along Indian coast is presented. The genome assembly was carried out using MaSurCA assembler that generated a data size [~]14.3 mb from short and long reads obtained from Illumina Hiseq 4000 and GridION-X5 respectively. This assembled genome data were used for predicting genes using Augustus gene prediction tool that reported 6720 genes and proteins. The gene sequences were used to unravel the metabolic pathway analysis using KAAS database. The protein sequences were used for secondary analysis to predict the presence of signal peptides using SignalP tool, predicting protein family, domains using Pfam tool and prediction of transmembrane helices in proteins using TMHMM tool. Presence of genes involved in plant growth-promotion and regulation (PGPR) including siderophore and IAA production, iron and sulfur transformation, zinc and phosphate solubilization, nitrogen fixation, synthesis of anti-bacterial and volatile organic compound (VOCs), were assigned. Additionally, acid and alkaline phosphatases, ACC deaminases and lytic enzymes such as {beta}-glucanases, proteases and chitinases involved in pathogen suppression, are also reported. The study elucidates comprehensive understanding of PGP attributes of MSD1 and its potential use in agriculture as bio-fertilizer /bio-stimulant.

genomics↗