bioRxiv Science⌕ Search

Biology subjects

Rademacher, T.

Publications and source records attributed to Rademacher, T..

2 recordsLinked to original sources

The Wood Image Analysis and Dataset (WIAD): open-access visual analysis tools to advance the ecological data revolution

O_LIEcological data is collected and shared at an increasingly rapid pace, but it is often shared in inconsistent and untraceable processed forms. Images of wood contain a wealth of information such as colours and textures but are most commonly reduced to ring-width measurements before they can be shared in various common file formats. Archiving digital images of wood samples in libraries, that have been developed for ecological analysis and are publicly available, remains the exception. C_LIO_LIWe developed the Wood Image Analysis and Dataset (WIAD) an open-source application including a web-interface to integrate basic visual analysis of wood samples, such as increment cores, thin sections or x-ray films, basic data processing, and archiving of the images and derived data to facilitate transparency and reproducibility in studies using visual characteristics of wood. C_LIO_LIWIAD provides user-friendly tools to manipulate images of wood samples, mark and measure wood characteristics such as growth increments, density fluctuations, early- and latewood widths, and fire scars, and to visualise, process, and archive images, metadata, and the derived data. C_LIO_LIWIAD constitutes a step towards the reproducible automation of tree-ring analysis, while establishing an open-source foundation to create improved community developed repositories which would enable novel ecological studies harnessing the wealth of existing visual data. C_LI

plant biology↗

Wood formation in an evergreen conifer is controlled by phloem transport of labile carbon, but nonstructural carbon concentrations are not

Wood formation is a crucial process for carbon sequestration, yet how variations in carbon supply affect wood formation and carbon dynamics in trees more generally remains poorly understood. To better understand the role of carbon supply in wood formation, we restricted phloem transport using girdling and compression around the stem of mature white pines and monitored the effects on local wood formation and stem CO2 efflux, as well as nonstructural carbon concentrations in needles, stems, and roots. Growth and stem CO2 efflux varied with location relative to treatment (i.e., above or below on the stem). We observed up to a two-fold difference in the number of tracheids formed above versus below the manipulations over the remaining growing season. In contrast, the treatments did not affect mean cell size noticeably and mean cell-wall area decreased only slightly below them. Surprisingly, nonstructural carbon pools and concentrations in the xylem, needles, and roots remained largely unchanged, although starch reserves declined and increased marginally below and above the girdle, respectively. Our results suggest that phloem transport strongly affects cell proliferation and respiration in the cambial zone of mature white pine, but has little impact on nonstructural carbon concentrations. These findings contribute to our understanding of how wood formation is controlled. HighlightRestrictions in phloem transport designed to affect carbon supply, lead to changes in wood formation and stem respiration of mature white pines without substantially changing local nonstructural carbon concentrations.

plant biology↗