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Qureshi, R.

Publications and source records attributed to Qureshi, R..

7 recordsLinked to original sources

The impact of seizures on REM sleep and the cholinergic pedunculopontine nucleus in a mouse model of Dravet Syndrome

Sleep disruption is a common and burdensome feature in epilepsy, with rapid eye movement (REM) sleep particularly affected. While sleep disturbances in epilepsy patients are multifactorial, clinical evidence suggests that recent seizures acutely impair REM sleep architecture. To investigate this relationship, we used a haploinsufficient mouse model of Dravet Syndrome, which allows experimental control of seizure timing and burden. We found that hyperthermia-induced seizures profoundly decreased subsequent sleep, specifically impairing REM entry. In vivo fiber photometry revealed acute, seizure-induced activation of cholinergic neurons in the pedunculopontine nucleus (PPN), a brainstem structure critical for REM entry. We additionally found that repeated seizures triggered anatomical changes in the PPN, including reduced cholinergic neuron number and significant hypertrophy of remaining cholinergic neurons. These results suggest seizures are a driver of both acute and chronic disruption of PPN cholinergic networks, which in turn impair REM sleep in epilepsy. Our findings identify the PPN as a potential therapeutic target for interventions to address sleep-related sequelae of seizures.

neuroscience↗

A Course-Undergraduate Research Experience (CURE) to explore the effect of structural variants on gene expression in C. elegans balancers

Bioinformatics, a discipline at the crossroads of Biology and Computational Sciences, also referred to as Computational Biology, is nowadays widely spread in research programs. However, implementing any Bioinformatics projects requires the ability to comprehend biological concepts and apply computational approaches, and rare are the undergraduate programs offering such multi-disciplinary training. In addition, understanding the dynamic between Biology research projects and Bioinformatics analyses is challenging with no real-life experience. Course-based undergraduate research experience (CURE) courses are innovative programs that allow more students to acquire research experience and provide the perfect setting to introduce students to applied bioinformatics. As a part of the Bachelor of Health Sciences of the Cumming School of Medicine at the University of Calgary (Canada), a CURE applied bioinformatics was implemented in the Winter of 2023 to 2025. Students investigated the effect of structural variants (SVs, genetic variants larger than 50 bp) on gene expression in the model organism Caenorhabditis elegans (a hermaphrodite 1-mm long roundworm). The students detected and characterized SVs by analyzing genome and transcriptome sequencing data of C. elegans strains called balancers, as they are known to carry large genomic variations balancing regions of the genome by limiting recombination and allowing maintenance of lethal mutations. They used Galaxy, a public web-based supercomputing resource, but also a local High-Performance computing system, and R, to report different effects of SVs on gene expression and splicing. Students research explained the molecular mechanism behind the uncoordinated phenotype caused by the reciprocal translocation eT1(III;V) and uncovered unexpected effects on gene expression on an understudied gene. We evaluated the courses impact on student learning journeys and showed that the CURE favored students understanding of the Bioinformatics field and fostered their research interest. We provide here guidelines to facilitate the CURE implementations to improve access for undergraduate students to bioinformatics research experiences.

bioinformatics↗

Characterization and application of hyperthermia-evoked seizures in a mouse model of focal cortical dysplasia

Rodent models of drug-resistant epilepsy are widely used to uncover mechanisms of seizures and to test the efficacy of treatments; however, the stochastic and relatively infrequent nature of spontaneous seizures in these models makes it challenging to observe and manipulate peri-ictal activity, and to rapidly screen therapeutics. As fever has been identified as a clinical seizure trigger, we investigated the ability of induced hyperthermia to trigger seizures in a mouse model of focal cortical dysplasia (FCD), a common cause of drug-resistant epilepsy. Experimental mice were generated via in utero electroporation of a gain-of-function RHEB variant (RHEBp.P37L). In adult Rheb-FCD mice, hyperthermia elicited behavioral seizures [~]80% of the time, with a mean temperature threshold of [~]40 {degrees}C. Using this acute paradigm, as a proof-of-concept, we found that chemogenetic inhibition of a subset of excitatory neurons within the dysplasia significantly elevated the threshold for hyperthermia-evoked seizures. We then confirmed the relevance of this acute finding to spontaneous epileptiform activity, using repeated chemogenetic inhibition across chronic recordings to confirm a reduction of spontaneous seizures as well as interictal spikes. Overall, our data demonstrate that hyperthermia-evoked seizures can be readily elicited in Rheb-FCD mice, offering a tractable platform for evaluating therapeutic interventions targeting seizure susceptibility in focal epilepsy.

neuroscience↗

ESAT-6 protein of Mycobacterium tuberculosis inhibits differentiation of human monocytes to dendritic cells

Mycobacterium tuberculosis (Mtb) employs multiple strategies to evade host immunity, including disruption of antigen presentation. Dendritic cells (DCs) are crucial for effective antigen presentation and T-cell activation. In this study, we show that mycobacterial protein, ESAT-6, impairs monocyte to DC differentiation with reduced expression of the DC marker, CD209. ESAT-6 treatment elevated IL-6 and IL-10 levels, but blocking of these cytokines failed to restore DC differentiation. Mechanistically, ESAT-6 suppressed phosphorylation of p65, establishing that ESAT-6 impairs DC differentiation by inhibiting NF-{kappa}B activation and this function is dependent on the last six amino acids of its C-terminal domain. This mechanism may represent a novel immune evasion strategy employed by Mtb to subvert host adaptive immune responses during infection.

immunology↗

LBH is a cancer stem cell- and metastasis-driving oncogene essential for WNT stem cell function in breast cancer

Cancer stem cells (CSCs) initiate tumors, resist treatment, and seed lethal metastases; yet CSC-specific treatments are lacking. Aggressive, treatment-resistant triple-negative breast cancers (TNBC) exhibit WNT pathway activation and are CSC enriched. Here, we show that Limb-Bud- and-Heart (LBH), a WNT/{beta}-catenin target required for normal mammary stem cell self-renewal, marks poor prognosis, stem-like TNBC, and is a key controller of breast cancer stemness. LBH is specifically expressed in tumor-initiating CD44+CD24-/low breast CSCs. LBH overexpression confers stem-like, metastatic traits on both TNBC and luminal origin, non-TNBC breast cancer cells by activating stem cell transcriptional programs. Importantly, silencing LBH potently suppresses tumor initiation and metastasis in vivo, and sensitizes TNBC cells to chemotherapy. LBH knockout in the MMTV-Wnt1 breast cancer mouse model, furthermore, revealed LBH is required for WNT-driven breast CSC expansion. Our findings identify LBH as an essential CSC driver downstream of WNT, and a new molecular target for anti-cancer stem cell therapy.

cancer biology↗

The fodder grass resources for ruminants: A indigenous treasure of local communities of Thal desert Punjab, Pakistan

Indigenous people have been using their regional grasses for rearing their animals for centuries. The present study is the first recorded traditional knowledge of grasses and feeding system for livestock from the Thal desert in Pakistan. Snowball method was used to identify key informants. Information was collected from 232 informants from six districts of Thal Desert through semi-structural questionnaire and site visits. The data was analyzed through Smiths salience index and Composite Salience using ANTHROPAC package in R software. On the whole 61 grasses were recorded from the study area and most of the species belongs to the Poaceae family (52 species). Based on palatability grasses were categorized into three major groups i.e. (A) High priority, (B) Medium priority and (C) Low priority. Species in Group A, abundantly present in the study area, highly palatable forage for all ruminants. 232(141M +91W) local informants were interviewed. Informants were grouped into three major age categories: 20-35 (48 informants), 36-50 (116 informants) and 51-67 years (68 informants). ANTHROPAC frequency analysis conformed the Smiths salience index and Composite Salience; Cynodon dactylon was the favorite species (6.46 SI, 0.6460 CS) followed by Cymbopogon jwarancusa (5.133 SI, 0.5133 CS) and Sorghum sp. was the third most salient species (5.121 SI, 0.5121 CS). Grasses were mostly available during the season of August and October and had also ethnoveterinary importance. This document about the traditional feeding of livestock from Thal Desert can strengthen the value of conserving our traditional knowledge, which was poorly documented before.

plant biology↗

A quantitative medico-botanical expedition of Fairy Meadows National Park, Diamir, Gilgit Baltistan, Pakistan

This study was conducted to investigate the ethnobotanical knowledge of the population of the Fairy Meadow National Park, Diamir, Gilgit Baltistan. The study area was previously ignored due to physical barriers, remoteness and religious extremism. The use of medicinal plants for various maladies, known to the elders of the community and passed orally to the younger generation was documented. A total of 146 informants were interviewed using semi-structured questionnaires. The data was quantitatively analyzed employing frequency of citation (FC), use value (UV), relative frequency of citation (RFC) along with Pearson correlation coefficient (PCC). A total of 90 plants species belonging to 77 genera and 49 different families have been documented. These medicinal plants were used against 55 diseases, especially stomach problems (23.3%), cough (17.7%), asthma and fever (16.6%). For 31 out of 90 plants species which had been reported either, new uses (28 plants) or new use-report (3 plants) were found. New reported medicinal plants include Allium gilgitensis, Astragalus gilgitensis and Pedicularia flava. The majority of the documented plants were wild collected (86%), herbs (60%), and leaves were the most widely used part (27%). The common method of preparation was powder (27%) mainly administered orally (81.7%). The highest use values were found for Berberis lyceum (5.47), Thymus lineari s(5.07) and Rhododendron anthopogon (5.0), while the plants with greater relative frequency of citation were Berberis lyceum (0.97), Thymus linearis (0.89) and Rhododendron anthopogon (0.75). The Pearson correlation coefficient is 0.836 between RFC and UV showing high positive association. This study was an extension to the ethnobotanical work done in Pakistan previously. We documented a wealth of traditional knowledge, and could record the uses of various species for the first time from Pakistan. The new use reports and new plants reported supplement the foundation of pharmacology and new drug development for complex and challenging disease

plant biology↗