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Queiroga, A. S.

Publications and source records attributed to Queiroga, A. S..

3 recordsLinked to original sources

A stochastic spatial model for heterogeneity in cancergrowth

Establishing a quantitative understanding of tumor heterogeneity, a major feature arising from the evolutionary processes taking place within the tumor microenvironment, is an important challenge for cancer biologists. Recently established experimental techniques enabled summarizing the variety of tumor cell phenotypes in proliferative or migratory. In the former, cells mostly proliferate and rarely migrate, while the opposite happens with cells having the latter phenotype, a \"go-and-grow\" description of heterogeneity. In this manuscript we present a discrete time Markov chain to simulate the spatial evolution of a tumor which heterogeneity is described by cells having those two phenotypes. The cell density curves have two qualitatively distinct temporal regimes, as they recover the Gompertz curve widely used for tumor growth description, and a bi-phasic growth which temporal shape resembles the tumor growth dynamics under influence of immunoediting. We also show how our representation of heterogeneity gives rise to variable spatial patterning even when the tumors have similar size and dynamics.\n\nAuthor summaryWe present a spatial stochastic model to represent the growth of a tumor as a structure having cells of two phenotypes: one whose cells have division as their predominant transition, and another where cells are mostly migrating. The migratory phenotype results from a transformation of the proliferative. Our proposition is based on the assumption that a tumor grows initially within a limited region while its cells are capable of acquire nutrients. During that phase, the cancer cells start changing their phenotype because of stress in their microenvironment and exhaustion of nutrients that lead them to become more migratory and capable of generating metastasis. Our model enables us to recover the usual dynamics observed in tumor growth such as a logistic-like curve, called Gompertz model, widely observed, or the bi-phasic growth observed characterized by equilibrium phase interspersed between two growth regimes. Our approach also enable us to understand the internal spatial and temporal structure of the two sub-populations and can be useful to investigate the phenomena underpinning heterogeneous tumor growth, a feature that helps on the design of treatment strategies based on mitigating heterogeneity related drug resistance.

systems biology↗

Some lessons and perspectives for applications of stochastic models in biological and cancer research

Randomness is an unavoidable feature of inner cellular environment and its effects propagate to higher levels of living matter organization such as cells, tissues, and organisms. Approaching those systems experimentally to understand their dynamics is a complex task because of the plethora of compounds interacting in a web that combines intra and inter level elements such that a coordinate behavior come up. Such a characteristic points to the necessity of establishing principles that help on the description, categorization, classification, and the prediction of the behavior of biological systems. The theoretical machinery already available, or the ones to be discovered motivated by biological problems, can play an important role on that quest. Here we exemplify the applicability of theoretical tools by discussing some biological problems that we have approached mathematically: fluctuations in gene expression and cell proliferation in the context of loss of contact inhibition. We discuss the methods that we have employed aiming to provide the reader with a phenomenological, biologically motivated, perspective of the use of theoretical methods. Furthermore, we discuss some of our conclusions after employing our approach and some research perspectives that they motivate.

systems biology↗

Stochastic model of contact inhibition and the proliferation of melanoma in situ

Contact inhibition is a central feature orchestrating cell proliferation in culture experiments; its loss is associated with malignant transformation and tumorigenesis. We performed a co-culture experiment with human metastatic melanoma cell line (SKMEL-147) and immortalized keratinocyte cells (HaCaT). After 8 days a spatial pattern was detected, characterized by the formation of clusters of melanoma cells surrounded by keratinocytes constraining their proliferation. In addition, we observed that the proportion of melanoma cells within the total population has increased. To explain our results we propose a spatial stochastic model (following a philosophy of the Widom-Rowlinson model from Statistical Physics and Molecular Chemistry) which considers cell proliferation, death, migration, and cell-to-cell interaction through contact inhibition. Our numerical simulations demonstrate that loss of contact inhibition is a sufficient mechanism, appropriate for an explanation of the increase in the proportion of tumor cells and generation of spatial patterns established in the conducted experiments.

cancer biology↗