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Qasaimeh, M.

Publications and source records attributed to Qasaimeh, M..

2 recordsLinked to original sources

Softer substrates mechanical primes sustained and metabolically fit CD8+ T cells for anti-tumor activity

Adoptive T cell therapy for solid tumors is limited by poor persistence of CD8+ T cells, a dysfunction that is often programmed during ex vivo expansion. Here, we show that, when biochemical inputs are held constant,substrate mechanics alone can direct durable anti-tumor function in primary human CD8+ T cells. Using polyacrylamide (PA) hydrogels of defined stiffness (soft [~]1 kPa; stiff [~]55 kPa) in both flat and bead formats, we first establish that contact geometry dominates early activation, whereas substrate stiffness governs the 14-day expansion trajectory. Across the rapid expansion protocol, flat PA substrates sustain proliferation, limit PD-1/LAG-3 acquisition, and preserve a balanced effector-regulatory cytokine profile. In contrast, Dynabeads-expanded cells exhibit net cell loss and a more pronounced decline in cytokine output over time. To define the underlying programs, RNA-seq identifies a 125-gene biomimetic core shared by both PA conditions but absent from Dynabeads, encompassing proliferation, OXPHOS, mechanobiology, and a stem-like precursor (Tpex) signature. Consistent with these transcriptional differences, metabolic profiling shows that flat soft PA best preserves dual glycolytic and mitochondrial capacity at day 14, indicating enhanced bioenergetic flexibility. Functionally, PA-primed CD8+ T cells display superior cytotoxicity against MDA-MB-231 and MCF-7 breast cancer cells in both 2D and collagen-based 3D co-cultures, with this advantage maintained under matrix constraints that mimic solid tumor microenvironments. Together, these findings establish substrate mechanics as a tunable and functionally decisive design parameter for engineering durable, solid-tumor-effective CD8+ T cell products in preclinical in vitro models of solid tumors.

immunology↗

Ecological and Stochastic Determinants of the Growth and Persistence of the Oral Pathogen Porphyromonas gingivalis

Population density plays a critical role in microbial fitness, yet its influence on pathogen colonization and persistence remains incompletely understood. Porphyromonas gingivalis (Pg) exhibits Allee-type growth, requiring a quorum threshold to replicate, yet is frequently detected at low abundance in vivo. We integrate quantitative growth experiments with mathematical modeling to identify ecological and stochastic determinants of Pg persistence. A cubic Allee-effect model quantifies a quorum threshold below which populations collapse, while conditioned medium from Veillonella parvula (Vp) lowers this threshold, indicating early-colonizer facilitation. Stochastic extensions and Fokker-Planck analysis show that microenvironmental noise enables escapes across the Allee barrier, consistent with long-term subthreshold experiments yielding a stationary, powerlaw-like distribution and under-threshold survival. Pg-Vp co-cultures further demonstrate replicate rescue outcomes for subcritical inocula. Critically, Vp reliably saturates to capacity, constraining terminal phases within the experimental horizon to coexistence (Pg persists with Vp at capacity) or Pg extinction. A two-species replicator model maps these outcomes onto a ({beta}, {gamma}) plane, restricting accessible regions once Vp is established and suggesting interventions that reduce facilitation or variability to restore eubiosis and limit Pg-associated inflammation.

systems biology↗