Biology subjects

Provencher, J. F.

Publications and source records attributed to Provencher, J. F..

7 recordsLinked to original sources

bioRxiv2025

IRIS PIGMENTATION IRREGULARITIES FOLLOWING AN AVIAN INFLUENZA OUTBREAK: IMPLICATIONS FOR DISEASE SURVEILLANCE AND POPULATION MONITORING IN A COLONIAL SEABIRD

Emerging infectious diseases can have catastrophic impacts on wildlife populations, yet identifying individuals that survived exposure, especially when external symptoms are absent, remains challenging. Since 2021, a virulent strain of highly pathogenic avian influenza virus (HPAIV H5N1 clade 2.3.4.4b) has caused unprecedented mortality in wild birds across continents. Northern Gannets (Morus bassanus) are among the species that suffered significant population declines in Europe and North America. At North Americas largest gannet colony (Bonaventure Island) dramatic mortality and reproductive failure occurred in 2022. Following this event, researchers noted a subset of gannets displaying irregular iris pigmentation, raising the possibility that this visible change may indicate a lasting effect of infection. Here, we build on earlier observations linking irregular iris pigmentation to HPAIV exposure in gannets using anti-nucleoprotein (NP) and anti-hemagglutinin (H5) antibodies. This provides the first quantitative test of this relationship using serological data and field-based digital photography. Iris irregularities were strongly associated ({rho} = -0.72) with antibodies to NP, supporting the hypothesis that they can indicate past exposure. The likelihood of NP antibody detection increased with iris pigment irregularity--about 50% likelihood at 40% irregularity, 65% at 50%, 77% at 60%, and over 90% above 77% irregularity. Moderate correlations ({rho} = 0.30) were observed for H5 antibodies. Our findings provide quantitative support for the hypothesis that iris pigmentation irregularities may serve as a visible, non-invasive marker of past HPAIV exposure in gannets. If validated across colonies and years, iris assessment could offer a rapid tool for tracking population health and recovery following HPAIV outbreaks, enhancing conservation monitoring and disease surveillance. Lay SummaryOur research shows clear evidence that irregular iris pigmentation in Northern Gannets is strongly linked to past infection with a deadly bird flu strain. This visible marker could allow scientists to rapidly identify surviving birds and monitor population health after outbreaks, helping conservation efforts across affected colonies. HighlightsO_LIIris pigmentation irregularities reveal past avian influenza exposure. C_LIO_LIExtent of iris pigmentation irregularity correlates with antibody levels. C_LIO_LIExposure likelihood increases with degree of iris pigmentation irregularity. C_LIO_LICould provide a rapid, non-invasive tool for wildlife disease and conservation monitoring. C_LI Graphical abstracts O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=134 SRC="FIGDIR/small/685885v1_ufig1.gif" ALT="Figure 1"> View larger version (60K): org.highwire.dtl.DTLVardef@12fa683org.highwire.dtl.DTLVardef@15d23b1org.highwire.dtl.DTLVardef@1d2425eorg.highwire.dtl.DTLVardef@10367cd_HPS_FORMAT_FIGEXP M_FIG C_FIG

physiology↗

bioRxiv2025

The disadvantage of having a big mouth: the relationship between insect body size and microplastic ingestion

Plastic pollution is ubiquitous, and animals are exposed to diverse plastic shapes and sizes. When plastics enter natural environments, they break down into microplastics (MPs; <5 mm) and likely become more accessible to smaller animals. Insects play critical environmental and economic roles, ingest plastics in the wild, and can physically degrade ingested MPs into smaller and more harmful nanoplastics. While particle size and body size undoubtedly impact plastic ingestion, we have no predictive understanding of how these factors interact to influence which plastics are a threat to which animals. To uncover these potential interactions, we studied how a model cricket species (Gryllodes sigillatus) interacts with plastics of differing sizes throughout a twentyfold change in body size during growth and development. We fed crickets a range of MP sizes of 38 to 500 {micro}m with clearly defined particle size thresholds. We investigated whether crickets would avoid MPs when given a choice and found that they do not; instead they gradually began to consume more of the plastic diet over time. We then studied how MP ingestion is influenced by body size and mouth size, and the extent of breakdown that occurs once MPs are ingested. We found that crickets would only consume whole beads when their mouth size was larger than the MP. While small MPs were more likely to be excreted whole, larger MPs were more extensively broken down as crickets grew. We conclude that crickets do not exhibit avoidance behaviour towards plastic and ingest it once a particle can be consumed whole. These effects of insect behaviour and body size on the likelihood of plastic ingestion and the degree to which MPs are degraded have important implications for regulating the size classes of plastic particles entering natural environments and how plastics move through those environments once discarded.

physiology↗

bioRxiv2024

Enhanced data collection in the Canadian Arctic for seabird bycatch information yields highly variable results

Incidental catch of seabirds (bycatch) in fisheries has been identified as a major threat to the conservation of seabird populations globally. Acquiring accurate, detailed data on seabird bycatch is an ongoing challenge to effective integrated ecosystem management of commercial fisheries. This is especially true in the Arctic region where different countries have highly variable reporting and data systems to track and understand seabird bycatch in fisheries. To collect detailed data on seabird bycatch in the Greenland halibut (Reinhardtius hippoglossoides) fishery in northern Canada, we applied two methods that asked for more information than standardly reported in the fishery as a voluntary effort with industry partners. We found that the amount of bird bycatch reported in both enhanced datasheets completed by at-sea observers (ASO) and carcass collections yielded different results when compared to the typical seabird bycatch reporting in the fisheries ASO database. Across three years of data collection (2016, 2018, and 2019), the number of seabirds reported using the enhanced data collection methods were 0.5-11-fold the number from typical ASO database values. In a fourth year of observations (2023), enhanced datasheets from the ASO reported no bycaught fulmars (gulls and terns were reported), but the accompanying photographs showed northern fulmars as bycatch, further supporting that seabird identification is hampering accurate reporting. We then used these data to model how the differences between data sources may fluctuate across years. These large discrepancies between the methods highlight the challenges with obtaining accurate and precise seabird bycatch data needed to implement a meaningful ecosystem approach to the management of the fisheries. Future modelling efforts need to take these differing data sources and variability into account to fully understand the potential population level impacts of fisheries on seabird populations.

ecology↗

bioRxiv2024

Geographic, ecological, and temporal patterns of seabird mortality during the 2022 HPAI H5N1 outbreak on the island of Newfoundland

Highly pathogenic avian influenza (HPAI) H5N1 caused mass seabird mortality across the North Atlantic in 2022. Following outbreaks in Europe, the first case in North America was detected on the island of Newfoundland (NFLD), Canada in November 2021, before spreading through all North American flyways. During the following breeding season, NFLD experienced the second-highest number of seabird mortalities in Canadian provinces. Surveys and citizen reports identified 13543 seabird mortalities from April to September 2022. Many carcasses occurred on the west coast of NFLD in May and June 2022. Reported mortalities peaked in July along the southeastern coast. In August and September, mortalities were concentrated along the northeastern coast. With the exception of two colony surveys, reported mortalities decreased in September. Most mortality was found among Northern Gannet (6622), Common Murre (5992), Atlantic Puffin (282), and Black-legged Kittiwake (217). Using comprehensive knowledge of seabird ecology, we formulated exploratory hypotheses regarding traits that could contribute to mortality. Species differences in mortality were most strongly associated with nesting density, timing of breeding, and at-sea overlap with allospecifics from other colonies. Unprecedented seabird mortality and ongoing transmission within the circulating avian influenza viruses highlight the need for continued monitoring and development of conservation strategies.

zoology↗

bioRxiv2024

Wild bird mass mortalities in eastern Canada associated with the Highly Pathogenic Avian Influenza A(H5N1) virus, 2022

In 2022, a severe outbreak of clade 2.3.4.4b Highly Pathogenic Avian Influenza (HPAI) H5N1 virus resulted in unprecedented mortality among wild birds in eastern Canada. Tens of thousands of birds were reported sick or dead, prompting a comprehensive assessment of mortality spanning the breeding season between April 1 and September 30, 2022. Mortality reports were collated from federal, Indigenous, provincial, and municipal agencies, the Canadian Wildlife Health Cooperative, non-governmental organizations, universities, and citizen science platforms. A scenario analysis was conducted to refine mortality estimates, accounting for potential double counts from multiple sources under a range of spatial and temporal overlap. Correcting for double counting, an estimated 40,966 wild birds were reported sick or dead in eastern Canada during the spring and summer of 2022. Seabirds and sea ducks, long-lived species that are slow to recover from perturbations, accounted for 98.7% of reported mortalities. Mortalities were greatest among Northern Gannets (Morus bassanus; 26,193), Common Murres (Uria aalge; 8,133), and American Common Eiders (Somateria mollissima dresseri; 1,945), however, these figures underestimate total mortality as they exclude unreported deaths on land and at sea. In addition to presenting mortality estimates, we compare mortalities with known population sizes and trends and make an initial assessment of whether population-level impacts are possible for the Northern Gannet, a species that has suffered significant global mortality, and two harvested species, Common Murre and American Common Eider, to support management decisions. We hypothesize that population-level impacts in eastern Canada are possible for Northern Gannets and American Common Eiders but are unlikely for Common Murres. This study underscores the urgent need for further research to understand the broader ecological ramifications of the HPAI outbreak on wild bird populations.

zoology↗

bioRxiv2023

Avian influenza viruses in wild birds in Canada following incursion of the highly pathogenic H5N1 virus from Eurasia in 2021/2022

Following detection of novel highly pathogenic avian influenza virus (HPAIV) H5N1 clade 2.3.4.4b in Newfoundland, Canada in late 2021, avian influenza surveillance in wild birds was scaled-up across Canada. Herein, we present results of Canadas Interagency Surveillance Program for Avian Influenza in wild birds during the first year (November 2021 - November 2022) following the incursions of HPAIV from Eurasia. Key objectives of the surveillance program were to (i) detect the presence, distribution and spread of HPAIV and other avian influenza viruses (AIVs), (ii) detect wild bird morbidity and mortality associated with HPAIV, (iii) identify the range of wild bird species infected by HPAIV, and (iv) characterize detected AIV. A total of 6,246 sick and dead wild birds were tested, of which 27.4% were HPAIV positive across 12 taxonomic orders and 80 species. Geographically, HPAIV detections occurred in all Canadian provinces and territories, with the highest numbers in the Atlantic and Central flyways. Temporally, peak detections differed across flyways, though the national peak occurred in April 2022. In an additional 11,295 asymptomatic harvested or live captured wild birds, 5.2% were HPAIV positive across 3 taxonomic orders and 19 species. Whole genome sequencing identified HPAIV of Eurasian origin as most prevalent in the Atlantic flyway, along with multiple reassortants of mixed Eurasian and North American origins distributed across Canada, with moderate structuring at the flyway scale. Wild birds were victims and reservoirs of HPAIV H5N1 2.3.4.4b, underscoring the importance of surveillance encompassing samples from sick and dead, as well as live and harvested birds to provide insights into the dynamics and potential impacts of the HPAIV H5N1 outbreak. This dramatic shift in presence and distribution of HPAIV in wild birds in Canada highlights a need for sustained investment in wild bird surveillance and collaboration across One Health partners.

zoology↗

bioRxiv2022

Characterizing microplastic ingestion, transformation, and excretion in insects using fluorescent plastics

Plastic pollution is a growing threat to our natural environment. Plastic waste/pollution results from high emissions of both macro (> 5 mm) and microplastics (MPs; < 5 mm) as well as environmental fractioning of macroplastics into microplastics. Microplastics have been shown to have a range of negative impacts on biota. Harmonized methods to accurately measure and count MPs from animal samples are limited, but what methods exist are not ideal for a controlled laboratory environment where plastic ingestion, transformation, and elimination can be quantified and related to molecular, physiological, and organismal traits. Here we propose a complete method for isolating and characterizing fluorescent MPs by combining several previously reported approaches into one comprehensive workflow. We combine tissue dissection, organic material digestion, sample filtering, and automated imaging techniques to show how fluorescently-labelled MPs provided to animals (e.g. in their diet) in a laboratory setting can be isolated, identified, and quantified. As a proof of concept, we fed crickets (Gryllodes sigillatus) a diet of 2.5% (w/w) fluorescently-labelled plastics and isolated and characterized plastic particles within the gut and frass.

zoology↗