Biology subjects

Prasad, T. K.

Publications and source records attributed to Prasad, T. K..

3 recordsLinked to original sources

bioRxiv2026

Subliminal Primes Bias the Spatial Locus of Involuntary Object Naming in a Two-Object Reflexive Imagery Task

Certain conscious contents--such as the covert name of a viewed object--arise involuntarily and resist suppression, a phenomenon captured by the Reflexive Imagery Task (RIT). Whether a subliminal prime can bias which of two simultaneously present objects captures such an involuntary naming response has not been established. We adapted a two-object RIT into a self-contained, browser-based instrument. Thirty-eight adults (M age = 21.6 years, SD = 2.3; 26 female) viewed 24 object pairs and were instructed to fixate a central cross, to refrain from thinking of the objects names, and to click an object whenever its name intruded into awareness. On each trial a masked prime (17 ms, flanked by pattern masks) was either the exact name of one object (Exact Word Prime), a semantic associate of one object (Semantic Prime), or a neutral string (No Prime), defining a primed side per trial. A post-experiment debriefing confirmed that participants noticed the masks but none consciously perceived or could identify the prime words, indicating that the primes were subliminal. Analyses excluded 91 of 912 trials (10.0%) with more than five clicks. The priming effect was robust across measures: an omnibus comparison of clicks across conditions was significant (Friedman {chi}{superscript 2}(2) = 6.59, p = .037); within both prime conditions participants clicked the primed side more than the not-primed side (Exact Word, p = .039; Semantic, p = .005); and the primed-to-not-primed ratio exceeded parity by roughly 57-59% (Laplace-smoothed ratio {approx} 1.58; one-sample Wilcoxon p < .001 for each). A Bayesian Poisson generalized linear mixed model with random participant intercepts confirmed a credible primed-side advantage (incidence rate ratio = 1.72, 95% credible interval [1.57, 1.90]) that did not differ between prime types. No general left/right response bias emerged. An exploratory ight-side x Exact Word Prime interaction was inconsistent across model classes and is reported as hypothesis-generating. The findings indicate that subliminal lexical and semantic primes can steer the spatial locus of involuntary object naming.

neuroscience↗

bioRxiv2026

Molecular Characterization of SARS-CoV-2 N Protein Interfaces: Implications for Oligomerization, RNA Binding, and Phase Separation

The SARS-CoV-2 nucleocapsid (N) protein is central to genomic RNA recognition, condensation, and packaging, yet the molecular organization of its multivalent N-N and N-RNA interaction network involved in this process remains unclear. Here, we define the oligomerization and RNA-binding interfaces of the C-terminal domain (CTD) and its flanking intrinsically disordered regions (IDRs), the leucine-rich helix (LH) and the C-terminal IDR (C-IDR), using size-exclusion chromatography (SEC), cross-linking, mutational studies and NMR spectroscopy. We identify discrete oligomerization interfaces within the CTD and C-IDR that drive higher-order assembly, and show, through liquid-liquid phase separation (LLPS) and electron microscopy (EM), that C-IDR residues are essential for RNA-induced condensate formation. Moreover, the mapping of RNA-binding residues highlights Arg277 as a conserved determinant of CTD-RNA recognition. Notably, the two IDRs exert opposing regulatory effects on RNA binding, with the C-IDR enhancing and the LH attenuating CTD-RNA interactions. Together, these findings reveal how cooperative interfaces between the CTD and its flanking IDRs orchestrate N-protein oligomerization and RNA condensate formation and highlight potential intervention sites for disrupting SARS-CoV-2 ribonucleoprotein assembly.

biophysics↗

bioRxiv2024

Structural and functional insights into nuclear role of Parkinson's Disease-associated α-Synuclein

-Synuclein (Syn) plays a critical role in the pathogenesis of Synucleinopathies. Although increased nuclear Syn localization induces neurotoxicity, its definitive physiological role remains elusive. Previous studies on nuclear Syn are limited to its interactions with individual histones and dsDNA, leaving a significant gap in understanding its interactions with assembled histone H2a-H2b dimer and (H3-H4)2 tetramer, as well as its role in chromatin regulation. Here, we demonstrated that Syn binds specifically to both H2a-H2b and (H3-H4)2 with high affinity. Truncation studies revealed that Syn(1-103) region interacts with (H3-H4)2, while the acidic (121-140) C-terminal end is crucial for H2a-H2b binding. Sequence analysis suggests Syn-dimer binding region contains a conserved DEF/YxP motif present in other dimer-binding histone chaperones. High-resolution structure of Syn- dimer binding region with H2a-H2b complex reveals that Syn adopts two binding modes (BM1 and BM2). In BM-1, Syn utilizes nucleosomal DNA-binding surface, while in BM-2, it engages with both DNA- and the H3-interaction interface. Additionally, dimer recognition by Syn overlaps with other dimer-binding histone chaperones, suggesting Syns potential role in the nucleosome assembly/disassembly process.

biophysics↗