Biology subjects

Pranty, A. I.

Publications and source records attributed to Pranty, A. I..

4 recordsLinked to original sources

bioRxiv2025

Urinary proteins from Sickle Cell patients induce inflammation and kidney injury via the TGFβ-p53 axis in a podocyte cell culture model.

BackgroundSickle cell disease (SCD) is an inherited blood disorder affecting the oxygen-carrying hemoglobin in red blood cells making them deform into a sickle shape. Hemolysis and vaso-occlusion associated with this process can lead to complications in many organs and frequently to renal complications. Numerous factors are considered to contribute towards the development of proteinuria (PU) in SCD including hyperfiltration, ischemia, oxidative stress and decreased nitric oxide (NO) bioavailability but the detailed pathophysiology still needs further elucidation. MethodsEmploying arrays, we investigated cytokines and kidney injury-associated markers in the urine of a cohort of SCD patients from Ghana carrying the SS and SC genotypes which were further sub-divided into groups with proteinuria (SCD_PU) and without proteinuria (SCD). ResultsWe identified up-and down-regulated proteins when comparing SCD with and without proteinuria. Amongst these is the well-established kidney injury marker-Clusterin which was up-regulated and could be validated in an ELISA-based assay. Refining the study to the SS and SC genotypes, we identified (and confirmed by ELISA) another established kidney injury marker-NGAL, as up-regulated in both genotypes and SCD with and without proteinuria. Metascape-based analysis of biological processes revealed "Cellular component disassembly" associated with proteins expressed in SCD but not regulated between PU and no PU and "leukocyte chemotaxis" down-regulated in SCD_PU vs. SCD. Interestingly, "Integrin-cell-surface interactions" was associated with proteins up-regulated between SCD_PU vs. SCD which is consistent with endothelial hyperplasia in the setting of glomerular hyperfiltration. To investigate the effect secreted urine proteins have on human podocytes in vitro, immortalized podocytes supplemented with SCD_PU urine showed elevated p53 levels in both immunofluorescence staining and RT-PCR compared to SCD. Additionally, RT-PCR revealed elevated levels of VEGF, NGAL and the pro-inflammatory proteins-TGF{beta}, IL6, IL8 and TNF. ConclusionWe hypothesize that the increased number of endothelial cells in hyperplasia and hyperfiltration leads to more Integrin-mediated links to podocyte foot processes at the glomerular basement membrane and to glomerular fibrosis. Severe inflammation and kidney injury in SCD_PU patients is induced by the TGF{beta}-p53 axis.

molecular biology↗

bioRxiv2024

Identification of novel evolutionarily conserved genes and pathways in human and mouse musculoskeletal progenitors

The axial skeletal system and skeletal muscles of the vertebrates arise from somites, the blocks of tissues flanking both sides of the neural tube. The progenitors of Somites, called the Presomitic Mesoderm (PSM) reside at the posterior end of a developing embryo. Most of our understanding about these two early developmental stages comes from the studies on chick and mouse, and in the recent past, there have been a few studies on human. Here, we have analysed and compared the RNA-sequencing data of PSM and somite tissues from Mouse and Human. The functional and pathway enrichment analysis identified the key Hub-genes that are evolutionarily conserved in the PSM and the somites of both the organisms that include 23 multifunctional genes likely to be associated with different developmental disorders in humans. Our analysis revealed that NOTCH, WNT, MAPK, BMP, Calcium, ErbB, cGMP-PKG, RAS and RAP1 signaling pathways are conserved in both human and mouse during the development of PSM and Somites. Furthermore, we validated the expression of representative conserved candidates in the hESCs-derived PSM and somite cells (NOG, BMP2, BMP7, BMP5, HES5 and MEF2C). Taken together, our study identifies putative gene interactions and pathways that are conserved across the mouse and human genomes, which may potentially have crucial roles in human PSM and somite development.

bioinformatics↗

bioRxiv2024

Hemozoin induces Malaria via activation of DNA damage, p38 MAPK and Neurodegenerative Pathways in Human iPSC-derived Neuronal Model of Cerebral Malaria

Malaria caused by Plasmodium falciparum infection results in severe complications including cerebral malaria (CM), in which approximately 30% of patients end up with neurological sequelae. Sparse in vitro cell culture-based experimental models which recapitulate the molecular basis of CM in humans has impeded progress in our understanding of its etiology. This study employed healthy human induced pluripotent stem cells (iPSCs) derived neuronal cultures stimulated with hemozoin (HMZ)-the malarial toxin as a model for CM. Secretome, qRT-PCR, Metascape, and KEGG pathway analyses were conducted to assess elevated proteins, genes, and pathways. Neuronal cultures treated with HMZ showed enhanced secretion of interferon-gamma (IFN-{gamma}), interleukin (IL)1-beta (IL-1{beta}), IL-8 and IL-16. Enrichment analysis revealed malaria, positive regulation of cytokine production and positive regulation of mitogen-activated protein kinase (MAPK) cascade which confirm inflammatory response to HMZ exposure. KEGG assessment revealed up-regulation of malaria, MAPK and neurodegenerative diseases-associated pathways which corroborates findings from previous studies. Additionally, HMZ induced DNA damage in neurons. This study has unveiled that exposure of neuronal cultures to HMZ, activates molecules and pathways similar to that observed in CM and neurodegenerative diseases. Furthermore, our model is an alternative to rodent experimental models of CM.

neuroscience↗

bioRxiv2023

Unconjugated bilirubin induces neuro-inflammation in an induced pluripotent stem cell-derived cortical organoid model of Crigler Najjar Syndrome

Bilirubin-induced neurological damage (BIND), which is also known as Kernicterus, occurs as a consequence of defects in the bilirubin conjugation machinery, thus resulting in unconjugated bilirubin (UCB) to cross the blood-brain barrier (BBB) and accumulation. Severe hyperbilirubinemia can be caused by a mutation within the UGT1A1 encoding gene. This mutation has a direct contribution towards bilirubin conjugation leading to Kernicterus as a symptom of Crigler Najjar Syndromes (CNS1, CNS2) and Gilbert syndrome, which results in permanent neurological sequelae. In this comparative study, we used human induced pluripotent stem cells (hiPSCs)-derived 3D-brain organoids to model BIND in vitro and unveil the molecular basis of the detrimental effects of UCB in the developing human brain. hiPSC-derived from healthy and CNS patients were differentiated into day-20 brain organoids, these were then stimulated with 200nM UCB. Analyses at 24- and 72-hrs post-treatment point at UCB-induced neuro-inflammation in both cell lines. Transcriptome and associated KEGG and Gene Ontology analyses unveiled activation of distinct inflammatory pathways such as cytokine-cytokine receptor interaction, MAPK signaling, calcium signaling, NF{kappa}B activation. Furthermore, both mRNA expression and secretome analysis confirmed an upregulation of pro-inflammatory cytokines such as IL6 and IL8 upon UCB stimulation. In summary, this novel study has provided insights into how a human iPSC-derived 3D-brain organoid model can serve as a prospective platform for studying the etiology of BIND-Kernicterus.

neuroscience↗