Biology subjects

Potapov, A.

Publications and source records attributed to Potapov, A..

9 recordsLinked to original sources

bioRxiv2026

Energetic and functional development of soil food webs along secondary succession

1. As ecosystems develop, aboveground biomass and belowground organic matter accumulate, while energy turnover declines. This trend is largely supported by vegetation studies, but remains unexplored for soil food webs that channel the majority of energy in terrestrial ecosystems. 2. Here, we tested whether successional theory applies to soil food webs across size-based compartments, ranging from microfauna (nematodes) to macrofauna (soil arthropods and earthworms), along a secondary succession in southwestern China, using an energy-flux approach. To assess whether forest restoration by planting follows natural succession, we also compared spruce and larch plantations with secondary birch forest of the same successional stage. 3. Supporting expectations of reduced energy turnover, the results showed an increasing animal biomass-to-energy flux ratio and a functional shift from herbivory-dominated (green) to detritivory-dominated (brown) energy channelling along succession. Soil food web compartments showed contrasting trends: macro-food webs shifted towards bacterial energy channels with decreasing predation, while micro-food webs maintained similar bacterial/fungal energy flux ratios and tended towards increasing predation. The larch plantation supported lower animal biomass than the secondary birch forest, whereas the spruce plantation did not differ. We further found that energy flux correlated positively with microbial biomass and soil animal diversity, but negatively with litter biomass during succession. 4. Overall, we expand successional theory by revealing the transformations in energy use and pathways within soil food webs along secondary succession, thereby advancing understanding of ecosystem functioning and guiding ecosystem restoration. Our results further suggest that tree plantations do not necessarily replicate the belowground development of natural succession, which should be considered in ecosystem restoration.

ecology↗

bioRxiv2026

Soil invertebrate biomass estimation from image-derived body area and contour length

1. Soil invertebrate biomass is closely linked to ecosystem processes, yet its routine quantification remains constrained by the effort required to weigh large numbers of small individuals. Length-mass relationships provide an indirect alternative, but body length can be difficult to standardise and extract automatically from images of curved, coiled or contracted organisms. Projected body area may provide a more tractable image-derived predictor, but its performance across diverse soil-faunal taxa and at the community scale remains insufficiently evaluated. 2. Here, we developed a framework using projected body area and contour length to estimate fresh and dry mass from measurements of 1,792 soil invertebrates representing 15 higher-level taxa. We fitted taxon-specific models for six well-represented groups and general models across taxa, and evaluated predictive performance using leave-one-out cross-validation. We then assessed cross-dataset transferability by comparing our data with those of Lemoine et al. (2026) and pooled the two datasets to derive combined models. Finally, we tested whether individual predictions could be scaled to independently measured community biomass. 3. Taxon-specific models generally reduced prediction error relative to general models, with mean absolute percentage error (MAPE) values of 6.9-37.3% for fresh mass and 7.6-30.2% for dry mass. General models retained MAPEs of 27.2% and 22.4%, respectively. Comparisons of our dataset with that of Lemoine et al. (2026) showed no detectable differences in six of eight taxon-by-mass slopes. Although intercepts frequently differed, no overall dataset effect was detected after accounting for taxa. Pooling both datasets broadened model development, while taxon-specific models generally retained lower error than the combined general model. Finally, community-level predictions tracked measured biomass across all model sets (R2 = 0.87-0.99), but absolute error varied among models and faunal groups (MAPE = 9.6-52.5%). 4. Body area and contour length extracted from images therefore provide a practical basis for scaling soil invertebrate biomass estimation from individuals to communities. Integration with automated imaging and segmentation tools such as flatbug, BIODISCOVER and CollembolAI could extend soil invertebrate monitoring at larger scales beyond abundance and taxonomic composition to biomass, while providing scalable inputs for analyses of food webs and general ecosystem ecology.

ecology↗

bioRxiv2023

Scale-dependent landscape-biodiversity relationships shape multi-taxa diversity in an oil palm monoculture under restoration

Enhancing biodiversity in monoculture-dominated landscapes is a pressing restoration challenge. Tree islands can enhance biodiversity locally, but the role of scale-dependent processes on local biodiversity remains unclear. Using a multi-scale approach, we explored how scale-dependent processes influence the diversity of seven taxa (woody plants, understory arthropods, birds, herbaceous plants and soil bacteria, fauna, and fungi) within 52 experimental tree islands embedded in an oil palm landscape. We show that local, metacommunity (between islands), and landscape properties shaped above- and below-ground taxa diversity, with the stronger effects on above-ground taxa. The spatial extent that best-predicted diversity ranged from 150 m for woody plants to 700 m for understory arthropods with below-ground taxa responding at large spatial extents. Our results underscore the need for multi-scale approaches to restoration. Additionally, our findings contribute to understanding the complex processes shaping multi-taxa diversity and offer insights for targeted conservation and restoration strategies.

ecology↗

bioRxiv2023

The Soil Food Web Ontology: aligning trophic groups, processes, and resources to harmonise and automatise soil food web reconstructions

Although soil ecology has benefited from recent advances in describing the functional and trophic traits of soil organisms, data reuse for large-scale soil food-web reconstructions still faces challenges. These obstacles include: (1) most data on the trophic interactions and feeding behaviour of soil organisms being scattered across disparate repositories, without well-established standard for describing and structuring trophic datasets; (2) the existence of various competing terms, rather than consensus, to delineate feeding-related concepts such as diets, trophic groups, feeding processes, resource types, leading to ambiguities that hinder meaningful data integration from different studies; (3) considerable divergence in the trophic classification of numerous soil organisms, or even the lack of such classifications, leading to discrepancies in the resolution of reconstructed food webs and complicating the reuse and comparison of food-web models within synthetic studies. To address these issues, we introduce the Soil Food Web Ontology, a novel formal conceptual framework designed to foster agreement on the trophic ecology of soil organisms. This ontology represents a collaborative and ongoing endeavour aimed at establishing consensus and formal definitions for the array of concepts relevant to soil trophic ecology. Its primary objective is to enhance the accessibility, interpretation, combination, reuse, and automated processing of trophic data. By harmonising the terminology and fundamental principles of soil trophic ecology, we anticipate that the Soil Food Web Ontology will improve knowledge management within the field. It will help soil ecologists to better harness existing information regarding the feeding behaviours of soil organisms, facilitate more robust trophic classifications, streamline the reconstruction of soil food webs, and ultimately render food-web research more inclusive, reusable and reproducible.

ecology↗

bioRxiv2022

Landscape heterogeneity and soil biota are central to multi-taxa diversity for landscape restoration

How to enhance biodiversity in monoculture-dominated landscapes is a key sustainability question that requires considering the spatial organization of ecological communities (beta diversity). Here, we experimentally tested if increasing landscape heterogeneity - through tree islands - is a suitable landscape restoration strategy when aiming to enhance multi-taxa diversity. We found that multi-taxa diversity resulted from islands fostering unique species (turnover: between 0.18 - 0.73) rather than species losses and gains (nestedness: between 0.03 - 0.34), suggesting that tree islands enhance diversity at the landscape scale. Through partial correlation networks, we revealed that landscape heterogeneity is associated with multi-taxa diversity (strength = 0.84). Soil biota were also central to the overall community by connecting beta diversity patterns across taxa. Our results show that increasing landscape heterogeneity enhances multi-taxa diversity in monoculture-dominant landscapes. Furthermore, we highlight that strategies aiming to enhance multi-taxa diversity should consider that spatial distributions of above- and below-ground communities are associated.

ecology↗

bioRxiv2022

Global environmental drivers of local abundance-mass scaling in soil animal communities

The relationship between species body masses and densities is strongly conserved around a three-quarter power law when pooling data across communities. However, studies of local within-community relationships have revealed major deviations from this general pattern, which has profound implications for their stability and functioning. Despite multiple contributions of soil communities to people, there is limited knowledge on the drivers of body mass-abundance relationship in these communities. We compiled a dataset comprising 155 soil-animal communities across four countries (Canada, Germany, Indonesia, USA), all sampled using the same methodology. We tested if variation in local climatic and edaphic conditions drives differences in local body mass-abundance scaling relationships. We found substantial variation in the slopes of this power-law relationship across local communities. Structural equation modeling showed that soil temperature and water content have a positive and negative net effect, respectively, on soil communities. These effects are mediated by changes in local edaphic conditions (soil pH and carbon content) and the body-mass range of the communities. These results highlight ways in which alterations of soil climatic and edaphic conditions interactively impact the distribution of abundance, and thus energy, between populations of small and large animals. These quantitative mechanistic relationships facilitate our understanding of how global changes in environmental conditions, such as temperature and precipitation, will affect community-abundance distributions and thus the stability and functioning of soil-animal communities.

ecology↗

bioRxiv2022

Tropical land use alters functional diversity of soil food webs and leads to monopolization of the detrital energy channel

Agricultural expansion is among the main threats to biodiversity and functions of tropical ecosystems. Conversion of rainforest into plantations erodes biodiversity with little-explored consequences for food-web structure and energetics of belowground communities, and associated ecosystem functions and services. We used a unique combination of approaches in stable isotope analysis and food web energetics to analyze in a comprehensive way consequences of the conversion of rainforest into plantations on the structure of and channeling of energy through soil animal food webs in Sumatra, Indonesia. Across the 23 animal groups studied, the channeling of energy shifted towards freshly-fixed plant carbon in plantations, indicating fast energy channeling as opposed to slow energy channeling in rainforests. Earthworms as major detritivores stayed unchanged in their trophic niche and monopolized the detrital pathway in plantations. Functional diversity metrics of soil food webs reflected the reduced amount of litter, tree density and species richness in plantations, providing guidelines how to improve the complexity of the structure of and channeling of energy through soil food webs. Our results highlight the strong restructuring of soil food webs with the conversion of rainforest into plantations threatening soil functioning and ecosystem stability in the long term.

ecology↗

bioRxiv2019

Different localization of fluorescently labeled N- and C-termini of nucleolin variants in human glioblastoma cell culture

Nucleolus-oriented protein nucleolin plays a significant role in the life of a normal mammalian cell. However, nucleolin is also actively expressed in cells of malignant tumors. At the same time, its expression in different types of cancer is significantly increased compared with normal cells. It is interesting that nucleolin localization often varies in tumor cells, namely in the cytoplasm and on the cell membrane. This fact is considered to be a poor prognostic indicator. This work is devoted to the study of the distribution of nucleolin in human glioblastoma cells. Glioblastoma is one of the most aggressive malignant tumors with an absolutely unfavorable prognosis. These tumors have a high proliferative potential, but in addition they are often characterized by invasive properties. Research on lineage cells does not let to fully study these properties of glioblastoma, since lineage cells are very different from the actual tumor. In our study, we used two primary cell cultures of human glioblastoma with varying degrees of invasiveness of the original tumors. The main interest was directed at studying the localization of nucleolin and its correlation with the invariability of the N- and C-termini of the corresponding protein. Particular attention was paid to the significance of the unaltered C-terminus of nucleolin for its distribution in the cells of transplanted human glioblastoma cultures derived from patient tissues.\n\nThe aim of this work is to find the relationship between the deformation of the N- or C-terminal sequences of nucleolin and its localization.We showed that in glioblastoma cells, with a high degree of invasion, nucleolin is found in the cytoplasm and close to the cell membrane, and the distribution of nucleolin with undeformed C and N-terminal does not match.

cancer biology↗

bioRxiv2018

Trophic consistency of supraspecific taxa in belowground invertebrate communities

1. Animals that have similar morphological traits are expected to share similar ecological niches. This statement applies to individual animals within a species and thus species often serve as the functional units in ecological studies. Species are further grouped into higher-ranked taxonomic units based on their morphological similarity and thus are also expected to be ecologically similar. On the other hand, theory predicts that strong competition between closely related species can lead to differentiation of ecological niches. Due to a high diversity and limited taxonomic expertise, soil food webs are often resolved using supraspecific taxa such as families, orders or even classes as functional units.\n\n2. Here we for the first time empirically tested the trophic consistency of supraspecific taxa across major lineages of temperate forest soil invertebrates: Annelida, Chelicerata, Myriapoda, Crustacea and Hexapoda. Published data on stable isotope compositions of carbon and nitrogen were used to infer basal resources and trophic level, and explore the relationship between taxonomic and trophic dissimilarity of local populations.\n\n3. Genera and families had normal and unimodal distributions of isotope niches, suggesting that supraspecific taxa are trophically consistent. The isotopic niche of populations across different localities is better predicted by species than by supraspecific taxa. However, within the same genus, the effect of species identity on stable isotope composition of populations was not significant in 92% of cases. The link to basal resources, i.e. plants or detritus, was convergent in different lineages, while trophic levels followed the Brownian motion taxonomic model. Virtually none of the studied taxa showed pronounced trophic niche conservatism within a lineage.\n\n4. Supraspecific taxa are meaningful as functional units in ecological studies, but the consistency varies among taxa and thus the choice of taxonomic resolution depends on the research question; generally, identification of taxa should be more detailed in more diverse taxonomic groups. We compiled a comprehensive list of mean {Delta}13C and {Delta}15N values of invertebrate taxa from temperate forest soils allowing to refine soil food-web models when identification to species level is not feasible.

ecology↗