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Popp, R.

Publications and source records attributed to Popp, R..

4 recordsLinked to original sources

Pericyte contact alters endothelial cell metabolism by promoting exchange of lactate through SLC16A3

Intimate crosstalk between endothelial cells and pericytes is fundamental for vascular development and stability, but the metabolic dimension of this interaction remains poorly defined. Using a filter-based co-culture system that mimics the shared basement membrane of the microcirculation, we performed an integrated multi-omics analysis to investigate how direct contact reprograms both cell types. We found that initial contact does not induce immediate quiescence but rather triggers a transient, low-level activation of an endothelial-to-mesenchymal transition (EndMT)-like state in endothelial cells, characterized by specific upregulation of genes involved in extracellular matrix production (e.g., collagen isoforms) and PDGFR signaling, without a full loss of endothelial identity. Concomitantly, pericytes shifted endothelial cell metabolism, increasing glycolysis and elevating intracellular pyruvate and lactate. Proteomic analysis of the contact interface revealed enrichment of solute carriers, most notably the lactate transporter SLC16A3. Functional studies demonstrated that pericytes act as a glycolytic partner, actively shuttling lactate to endothelial cells via SLC16A3. This lactate did not fuel the TCA cycle but instead served as a signaling metabolite, driving widespread alterations in the endothelial acetylome and lactylome, particularly affecting proteins involved in glycolytic metabolism. In vitro, exogenous lactate potentiated cytokine-induced EndMT and upregulated lactylation-associated genes. The physiological relevance of this lactate shuttle was confirmed in vivo, where endothelial-specific deletion of Slc16a3 in mice impaired postnatal retinal angiogenesis, leading to reduced vessel density and diminished endothelial-pericyte overlap without affecting endothelial cell proliferation. Our findings establish that vessel maturation is orchestrated by a metabolically gated phase of plasticity initiated upon first contact, wherein a targeted EndMT-like program and a pericyte-driven lactate signaling axis are integrated to coordinate vascular network assembly.

physiology↗

Injury-induced Neuregulin-ErbB signaling from muscle mobilizes stem cells for whole-body regeneration in Acoels

The activation of progenitor cells near wound sites is a common feature of regeneration across species, but the conserved signaling mechanisms responsible for this step in whole-body regeneration are still incompletely understood. The acoel Hofstenia miamia undergoes whole-body regeneration using Piwi+ pluripotent adult stem cells (neoblasts) that accumulate at amputation sites early in the regeneration process. The EGFR signaling pathway has broad roles in controlling proliferation, migration, differentiation, and cell survival across metazoans. Using a candidate RNAi screening approach, we identify the Hofstenia EGFR erbB4-2 and Neuregulin nrg-1 genes as essential for blastema formation. Structure prediction of NRG-1 and ERBB4-2 proteins supports the likelihood of these factors interacting directly. After amputation injuries, nrg-1 expression is induced in body-wall muscle cells at the wound site by 6 hours and localizes to the tip of the outgrowing blastema over the next several days, while erbB4-2 is broadly expressed, including in muscle and neoblasts. Under nrg-1(RNAi) and erbB4-2(RNAi) conditions that impair blastema formation, animals still undergo the earliest responses to injury to activate expression of the Early Growth Response transcription factor egr, indicating a crucial role for EGFR signaling downstream of initial wound activation. nrg-1(RNAi) and erbB4-2(RNAi) animals possess Piwi+ and H3P+ mitotic neoblasts which hyperproliferate normally after amputation, but these cells fail to accumulate at the wound site. Therefore, muscle provides a source for Neuregulin-ErbB signaling necessary for the mobilization of proliferative progenitors to enable blastema outgrowth for whole-body regeneration in Hofstenia. These results indicate a shared functional requirement for muscle signaling to enable regeneration between planarians and acoels across 550 million years of evolution.

developmental biology↗

SysQuan: repurposing SILAC mice for the affordable absolute quantitation of the human proteome

Relative quantitation, used by most MS-based proteomics laboratories to determine protein fold-changes, requires samples being processed and analyzed together for best comparability through minimizing batch differences. This limits the adoption of MS-based proteomics in population-wide studies, and the detection of subtle but relevant changes in heterogeneous samples. Absolute quantitation circumvents these limitations and enables comparison of results across laboratories, studies, and longitudinally. However, high costs of the essential stable isotope labeled (SIL) standards prevents widespread access and limits the number of quantifiable proteins. Our new approach, called "SysQuan", repurposes SILAC mouse tissues/biofluids as system-wide internal standards for matched human samples to enable absolute quantitation of, theoretically, two-thirds of the human proteome using 157,086 shared tryptic peptides. We demonstrate that SysQuan enables quantification of 70% and 31% of the liver and plasma proteomes, respectively. We demonstrate for 14 metabolic proteins that abundant SIL mouse tissues enable cost-effective reverse absolute quantitation in, theoretically, 1000s of human samples. Moreover, 10,000s of light/heavy doublets in untargeted SysQuan datasets enable unique post-acquisition absolute quantitation. SysQuan empowers researchers to replace relative quantitation with affordable absolute quantitation at scale, making data comparable across laboratories, diseases and tissues, enabling completely novel study designs and increasing reusability of data in repositories. TOC Graphic O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=115 SRC="FIGDIR/small/622109v1_ufig1.gif" ALT="Figure 1"> View larger version (26K): org.highwire.dtl.DTLVardef@c7a58org.highwire.dtl.DTLVardef@1344320org.highwire.dtl.DTLVardef@2321e3org.highwire.dtl.DTLVardef@85bf2d_HPS_FORMAT_FIGEXP M_FIG C_FIG

systems biology↗

Affinity-mass spectrometric technologies for quantitative proteomics in biological fluids

Proteins are the functional molecules in organisms and are therefore excellent biomarker candidates for a diversity of diseases. Immunoassays and mass spectrometry (MS) are two major technologies being used in proteomics; however, they either lack specificity or sensitivity. An emerging trend is to combine immunoassays with MS (which we call \"affinity-MS\"). This is an important milestone in quantitative proteomics, making it possible to measure low-abundance proteins with high specificity. The targeted enrichment and the assignment of mass-to-charge ratios to different molecules provide two selection criteria, making affinity-MS highly specific. Picogram-per-milliliter limits of detection have been obtained for many proteins. Furthermore, multiplexing capacity of >150 proteins has been achieved. This article reviews different formats of affinity-enrichment methods, and demonstrates how they are interfaced with both electrospray ionization (ESI) and matrix-assisted laser desorption/ionization (MALDI) MS. The pros and cons of these techniques are compared, and future prospectives are discussed.

molecular biology↗