Biology subjects

Popp, M.

Publications and source records attributed to Popp, M..

4 recordsLinked to original sources

bioRxiv2026

Geographic and Climatic Origins Shape the Leaf Metabolome of Populus trichocarpa

O_LIBackground and Aims: Chemodiversity is a fitness-relevant trait shaped by genetics, environment, and their interaction. Populus trichocarpa naturally inhabits broad climatic gradients and shows extensive variation in specialised metabolism. We investigated whether provenance and climate of origin imprint leaf chemodiversity and class-level relationships under common-garden conditions, and how these patterns relate to gene expression. C_LIO_LIMethods: Leaves from 87 P. trichocarpa genotypes representing 22 provenances from the west coast of North America growing in a common garden were profiled by untargeted FT-ICR-MS (1030 features) and targeted LC-MS/MS. A subset of 41 genotypes was subject to RNA-seq analyses. We tested whether provenance influenced multivariate patterns and whether metabolomic differences were related to geographic and climatic distance, where chemodiversity was quantified as Functional Hill Diversity. C_LIO_LIKey Results: P. trichocarpa metabolomes differed among origins despite shared growth conditions and showed distance-decay with both geography and climate. North-south extremes were well separated, and within-drainage samples shared high similarity. Flavonoid and isoprenoid pools strongly co-varied across individuals, whereas isoprene synthase activity did not predict total isoprenoids. Transcriptomes showed within-pathway coherence but limited overall provenance separation. C_LIO_LIConclusions: Leaf chemistry in P. trichocarpa retains signatures of geographic origin even under common-garden conditions. Coordinated investment in flavonoids and isoprenoids, together with among-origin differences in functional chemodiversity, reveals provenance-linked chemical fingerprints that complement genomic and metabolic trait data for climate-informed deployment. C_LI

plant biology↗

bioRxiv2023

Understanding the phytochemical diversity of plants: Quantification, variation and ecological function

Plants produce a great number of phytochemical compounds mediating a variety of different functions. Recently, phytochemical diversity (chemodiversity), a way which to quantify the complex phenotype formed by sets of phytochemicals, has been suggested to be important for function. However, no study has systematically examined the potential (in)direct functional importance of chemodiversity on a general level, partly due to a lack of an agreement on how to quantify this aspect of the plant phenotype. This paper has four aims: 1) We discuss how chemodiversity (deconstructed into components of richness, evenness and disparity) may quantify different aspects of the phenotype that are ecologically relevant. 2) We systematically review the literature on chemodiversity to examine methodological practices, explore ecological patterns of variability in diversity across different levels of biological organization, and investigate the functional role of this diversity in interactions between plants and other organisms. 3) We provide a framework facilitating decisions on which measure of chemodiversity is best used in different contexts. 4) We outline open questions and avenues for future research in this area. A more thorough understanding of phytochemical diversity will increase our knowledge on the functional role phytochemical compounds, and how they shape ecological interactions between plants and their environment.

ecology↗

bioRxiv2023

Inter-laboratory comparison of plant volatile analyses in the light of intra-specific chemodiversity

IntroductionAssessing intraspecific variation in plant volatile organic compounds (VOCs) involves pitfalls that may bias biological interpretation, particularly when several laboratories collaborate on joint projects. Comparative, inter-laboratory ring trials can inform on the reproducibility of such analyses. ObjectivesIn a ring trial involving five laboratories, we investigated the reproducibility of VOC collections with polydimethylsiloxane (PDMS) and analyses by thermal desorption-gas chromatography-mass spectrometry (TD-GC-MS). As model plant we used Tanacetum vulgare, which shows a remarkable diversity in terpenoids, forming so-called chemotypes. We performed our ring-trial with two chemotypes to examine the sources of technical variation in plant VOC measurements during pre-analytical, analytical, and post-analytical steps. MethodsMonoclonal root cuttings were generated in one laboratory and distributed to five laboratories, in which plants were grown under laboratory-specific conditions. VOCs were collected on PDMS tubes from all plants before and after a jasmonic acid (JA) treatment. Thereafter, each laboratory (donors) sent a subset of tubes to four of the other laboratories (recipients), which performed TD-GC-MS with their own established procedures. ResultsChemotype-specific differences in VOC profiles were detected but with an overall high variation both across donor and recipient laboratories. JA-induced changes in VOC profiles were not reproducible. Laboratory-specific growth conditions led to phenotypic variation that affected the resulting VOC profiles. ConclusionOur ring trial shows that despite large efforts to standardise each VOC measurement step, the outcomes differed both qualitatively and quantitatively. Our results reveal sources of variation in plant VOC research and may help to avoid systematic errors in similar experiments.

plant biology↗

bioRxiv2018

A Haploid Genetic Screening Method for Proteins Influencing Mammalian Nonsense-Mediated mRNA Decay Activity

Despite a long appreciation for the role of nonsense-mediated mRNA decay (NMD) in the destruction of faulty, disease-causing mRNAs, as well as its role in the maintenance of normal, endogenous transcript abundance, systematic unbiased methods for uncovering modifiers of NMD activity in mammalian cells remain scant. Here we present and validate a haploid genetic screening method for identifying proteins and processes that stimulate NMD activity involving a 3'-untranslated region exon-junction complex. This reporterbased screening method can be adapted for interrogating other pathways whose output can be measured by the intracellular production of fluorescent proteins.

molecular biology↗