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Pontier, D.

Publications and source records attributed to Pontier, D..

3 recordsLinked to original sources

Contrasted hybridization patterns between two local populations of European wildcats in France

The European wildcat (Felis silvestris silvestris) is threatened across the totality of its area of distribution by hybridization with the domestic cat F.s. catus. The underlying ecological processes promoting hybridization, remain largely unknown. In France, wildcats are mainly present in the North-East but signs of their presence in the Pyrenees have been recently provided. However, no studies have been carried out in the French Pyrenees to assess the genetic status of wildcats. We have compared a local population of wildcats living in a continuous habitat in the French Pyrenees and a local population of wildcats living in a fragmented habitat in Northeastern France to evaluate how habitat fragmentation influence the population structure of European wildcats. Close kin were not found in the same geographic location contrary to what was observed for females in the Northeastern wildcat population. Furthermore, there was no evidence of hybridization in the Pyrenean wildcats and only one domestic cat raised suspicions while hybridization was categorically detected in northeastern France. The two wildcat populations were significantly differentiated (Fst = 0.08) and the genetic diversity of the Pyrenean wildcats was lower than that of other wildcat populations in France and in Europe. Taken together, these results suggest that habitat fragmentation, and in particular the absence of agricultural fields, may play an important role in lowering the probability of hybridization by reducing the likelihood of contact with domestic cats. Moreover, our results suggest that the French Pyrenean wildcat populations is isolated and may be threatened by a lack of genetic diversity.

ecology

A bacterial GW-effector targets Arabidopsis AGO1 to promote pathogenicity and induces Effector-triggered immunity by disrupting AGO1 homeostasis

Pseudomonas syringae type III effectors were previously shown to suppress the Arabidopsis microRNA (miRNA) pathway through unknown mechanisms. Here, we first show that the HopT1-1 effector promotes bacterial growth by suppressing the Arabidopsis Argonaute 1 (AGO1)-dependent miRNA pathway. We further demonstrate that HopT1-1 interacts with Arabidopsis AGO1 through conserved glycine/tryptophan (GW) motifs, and in turn suppresses miRNA function. This process is not associated with a general decrease in miRNA accumulation. Instead, HopT1-1 reduces the level of AGO1-associated miRNAs in a GW-dependent manner. Therefore, HopT1-1 alters AGO1-miRISC activity, rather than miRNA biogenesis or stability. In addition, we show that the AGO1-binding platform of HopT1-1 is essential to suppress the production of reactive oxygen species (ROS) and of callose deposits during Pattern-triggered immunity (PTI). These data imply that the RNA silencing suppression activity of HopT1-1 is intimately coupled with its virulence function. Overall, these findings provide sound evidence that a bacterial effector has evolved to directly target a plant AGO protein to suppress PTI and cause disease.

plant biology

Metabarcoding for the parallel identification of several hundred predators and their preys: application to bat species diet analysis

Assessing diet variability is of main importance to better understand the biology of bats and design conservation strategies. Although the advent of metabarcoding has facilitated such analyses, this approach does not come without challenges. Biases may occur throughout the whole experiment, from fieldwork to biostatistics, resulting in the detection of false negatives, false positives or low taxonomic resolution. We detail a rigorous metabarcoding approach based on a short COI minibarcode and two-step PCR protocol enabling the all at once taxonomic identification of bats and their arthropod preys for several hundreds of samples. Our study includes faecal pellets collected in France from 357 bats representing 16 species, as well as insect mock communities that mimic bat meals of known composition, negative and positive controls. All samples were analysed using three replicates. We compare the efficiency of DNA extraction methods and we evaluate the effectiveness of our protocol using identification success, taxonomic resolution, sensitivity, and amplification biases. Our parallel identification strategy of predators and preys reduces the risk of mis-assigning preys to wrong predators and decreases the number of molecular steps. Controls and replicates enable to filter the data and limit the risk of false positives, hence guaranteeing high confidence results for both prey occurrence and bat species identification. We validate 551 COI variants from arthropod including 18 orders, 117 family, 282 genus and 290 species. Our method therefore provides a rapid, resolutive and cost-effective screening tool for addressing evolutionary ecological issues or developing chirosurveillance and conservation strategies.

ecology