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Polli, D.

Publications and source records attributed to Polli, D..

3 recordsLinked to original sources

Cellular Density Homeostasis Is Governed by an Anisotropic Attractor and Predictive Feedback Control

Cell density is a fundamental biophysical property of living cells, yet the dynamical architecture underlying density homeostasis remains unknown. Here, we reconstruct the geometry, dynamics, and control structure governing cellular density regulation from single-cell mass-volume measurements acquired during recovery from osmotic perturbation. We identify a persistent anisotropic attractor in mass-volume state space that permits coordinated density-preserving fluctuations while strongly suppressing density-changing deviations. Optimal transport analysis reveals directed recovery trajectories confined to this attractor, enabling inference of an effective density-restoring control law. Density deviations are associated with coordinated changes in biomass accumulation and volume expansion that together generate an effective density-restoring control law. Moreover, density error contains significant predictive information regarding future corrective behavior, revealing an information-rich component of cellular regulation. Together, these findings establish cellular density homeostasis as an emergent dynamical control process and demonstrate how attractor reconstruction, optimal transport, and information theory can be combined to uncover the organizing principles of biological homeostasis.

biophysics↗

Effects of biological fixation methods on stimulated Raman scattering microscopy signal

Stimulated Raman Scattering (SRS) microscopy enables label-free imaging of cells and tissues in their native state with chemical specificity. However, there are often experimental advantages of chemical fixation of samples prior to imaging, which can introduce perturbations that may alter the native state of the samples, and possibly impact the SRS signal. In this study, we systematically characterize the effects of common fixatives (Paraformaldehyde, Formalin, Glutaraldehyde, Methanol, Ethanol) on the preservation of cellular integrity and molecular composition in a Hela cell model as observed by SRS microscopy. We demonstrate how the different fixatives can influence lipid and protein content, and overall cell morphology, with significant implications for the accuracy of quantitative SRS microscopy. Our findings indicate that Paraformaldehyde (PFA) imposes minimal disruption to cellular and molecular states compared to the other fixatives tested, and suggest Glutaraldehyde (GA) as a suitable alternative for SRS imaging. This study provides insights for the choice of the optimal sample preparation, enabling more reliable SRS-based studies for the evaluation of cellular processes and disease mechanisms where fixation is used.

cell biology↗

A tripartite organelle platform links growth factor receptor signaling to mitochondrial metabolism

One open question in the biology of growth factor receptors is how a quantitative input (i.e., ligand concentration) is decoded by the cell to produce specific response(s). Here, we show that an EGFR endocytic mechanism, non-clathrin endocytosis (NCE), which is activated only at high ligand concentrations and targets receptor to degradation, requires a tripartite organelle platform involving the plasma membrane (PM), endoplasmic reticulum (ER) and mitochondria. At these contact sites, EGFR-dependent, ER-generated Ca2+ oscillations are sensed by mitochondria, leading to increased metabolism and ATP production. Locally released ATP is required for cortical actin remodeling and EGFR-NCE vesicle fission. The same biochemical circuitry is also needed for an effector function of EGFR, i.e., collective motility. The multiorganelle signaling platform herein described mediates direct communication between EGFR signaling and mitochondrial metabolism, and is predicted to have a broad impact on cell physiology as it is activated by another growth factor receptor, HGFR/MET.

cell biology↗