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Podlipensky, X.

Publications and source records attributed to Podlipensky, X..

3 recordsLinked to original sources

Decoding acute neuroinflammatory states from the 3D architecture of in vitro microglia

Microglia, core brain immune defenders, rapidly polarize into pro- or anti-inflammatory states that shape neuronal survival during acute brain inflammation. Yet, how these inflammatory states are encoded at the native cellular level remains unclear. While microglial states associate with specific molecular and organelle markers, it is unknown whether their cellular architecture integrates robust metabolic and structural features. Here, we quantitatively decode inflammatory states from the 3D architecture of individual in vitro mouse microglia (BV-2). Using soft X-ray tomography on established BV-2 polarization, we identify coordinated intracellular organization distinguishing homeostatic, pro-inflammatory, and anti-inflammatory cells, including characteristic lipid droplet-endosome architectures. We further link lipid-endosome reorganization with mTORC1 pathway, by functionally implicating sestrin-2 in promoting anti-inflammation. Finally, we resolve the time-dependent remodeling of lipid droplet 3D profiles by their distinct lipidomic composition across inflammatory states. Overall, our work enables deciphering microglia states in disease-relevant models, with potential to ultimately understand brain immunity.

cell biology↗

Extrinsic polarity cues control lamination versus cluster-based organisation in vertebrate retinal development

1.Photosensitive organs are essential for most animals to perceive and respond to their environment. While the gene regulatory networks establishing retinal identity are deeply conserved across metazoans (reviewed in Gehring, 2012; Vopalensky & Kozmik, 2009; Hahn et al., 2023), the retinal architecture varies widely--from invertebrate compound eyes to vertebrate camera-type eyes (Lamb et al., 2007; Schwab, 2017; Arendt & Wittbrodt, 2001). Despite this morphological diversity, early eye anlagen in both, invertebrates and vertebrates, share an initial pseudo-stratified epithelial organization (Weasner & Kumar, 2022; Randlett et al., 2010; Das et al., 2003; Kitambi & Malicki, 2008), which is maintained and elaborated into multi-layered retinae in vertebrates. In contrast, the invertebrate neuroepithelium is re-organized as ommatidia develop. Laminar organisation of the vertebrate retina appears to be a consequence of initial polarisation of the retinal neuroepithelium. This is, however, challenging to test in the organismal context. To address the plasticity of retinal architecture and the impact of epithelial polarity on the structuring of retinal tissue, we take advantage of retinal organoids derived from medaka (Oryzias latipes) (Zilova et al., 2021) that allow to modulate polarity cues and test their impact on the level of epithelialization and structural organisation of the forming retina. We show that under specific culture conditions, medaka retinal organoids undergo a striking morphological switch depending on the level of apico-basal polarity imposed. When polarity cues are continuously provided, a laminated retinal epithelium is established in the organoid. The absence of polarity cues results in the formation of horizontal cellular clusters containing the retinal cell types, which form the vertical retinal column in the developing embryo. We demonstrate that the emergence of this alternative retinal architecture is associated with a loss of epithelial polarity, notably the absence of extracellular matrix (ECM) components, such as laminin, which efficiently rescues lamination. Our findings indicate that tissue-level polarization and lamination in vertebrate retinae require specific extrinsic cues, and that in their absence, differentiating retinal cell types self-organize into structurally distinct, retinal units. This reveals an unexpected plasticity in vertebrate retinal development and indicates a potential for alternative modes of retinal patterning. O_FIG O_LINKSMALLFIG WIDTH=155 HEIGHT=200 SRC="FIGDIR/small/688026v1_ufig1.gif" ALT="Figure 1"> View larger version (52K): org.highwire.dtl.DTLVardef@100bb1eorg.highwire.dtl.DTLVardef@fceb9borg.highwire.dtl.DTLVardef@d036a7org.highwire.dtl.DTLVardef@1b41483_HPS_FORMAT_FIGEXP M_FIG C_FIG Retinal cells in medaka organoids adopt either a continuous layered epithelium when supported by laminin or a unit-based, ommatidia-like organization when epithelial continuity is lost. This dual outcome suggests that epithelial integrity represents a branching point between vertebrate and invertebrate strategies of retinal patterning, providing an experimental system to replay alternative evolutionary trajectories of eye design.

developmental biology↗

Morphology-dependent entry kinetics and spread of influenza A virus

Influenza A viruses (IAV) display a broad variety of morphologies ranging from spherical to long filamentous virus particles. These diverse phenotypes are believed to allow the virus to overcome various immunological and pulmonary barriers during entry into the airway epithelium and influence the viral entry pathway. Remarkably, lab-adapted IAV strains lost this morphological variance and exhibit preferred spherical morphology. However, it remains unclear which factors lead to this lab-adapted preference and which pulmonary defense factors are responsible for the preferred filamentous morphology in physiological settings. In this study, we established fluorescent reporter viruses with spherical or filamentous morphology but with the same surface glycoproteins. We developed a correlative fluorescence and scanning electron microscopy workflow to analyze the impact of viral morphology on cell-to-cell spread and identify conditions under which IAV with either spherical or filamentous morphology confer an advantage. Our findings demonstrate that filamentous IAV cell-to-cell spread is significantly slower in various cell lines, which can explain the predominant spherical morphology in lab-adapted strains. This observation is consistent with delayed entry kinetics of filamentous viruses structurally analyzed by cellular cryo-electron tomography. We found that cellular junction integrity and mucin do not exert morphology-dependent inhibition of IAV cell-to-cell spread. On the other hand, filamentous virions confer an advantage under the pressure exerted by neutralizing antibodies against hemagglutinin.

microbiology↗