Biology subjects

Pleil, K.

Publications and source records attributed to Pleil, K..

4 recordsLinked to original sources

bioRxiv2026

Expanding Hippocampal Ensembles through LINE-1 RNA Downregulation Enhances Cognition

Episodic memories are encoded through the activation of small overlapping neuronal ensembles, a coding principle that ensures efficient encoding and high memory capacity. While cellular excitability is known to drive the allocation of select hippocampal neurons into these ensembles, the underlying molecular mechanisms remain elusive. Here, an epigenetic-functional analysis of hippocampal dentate granule cells revealed robust nuclear expression of RNA from autonomous LINE-1 retrotransposons, with significantly lower LINE-1 RNA levels in environmentally activated neurons compared to non-activated counterparts. Knockdown of LINE-1 RNA in the dentate gyrus increased action potential firing capacity and expanded the number of environmentally activated cells, indicating that LINE-1 expression is inversely correlated with ensemble eligibility. LINE-1 RNA knockdown enhanced spatial working memory at the expense of pattern separation, a trade-off consistent with expanded dentate gyrus ensembles and diminished sparse coding. Together, these findings demonstrate that nuclear LINE-1 RNA was co-opted during evolution to control ensemble eligibility in dentate granule cells, a novel postmitotic neuronal function for LINE-1 RNA that restricts ensemble size to preserve sparse coding and support pattern separation.

neuroscience↗

bioRxiv2025

Prenatal adversity configures a subpopulation of ventral dentate granule cells for recruitment to drive innate anxiety

Adverse prenatal environment is a risk factor for the development of psychiatric disorders. Although studies have implicated epigenetic mechanisms, little is known about how epigenomic changes come about and lead to abnormal behaviors in affected individuals. We sought to identify epigenomic and transcriptomic signatures induced by a proinflammatory gestational environment in the ventral dentate gyrus (vDG), a hippocampal region linked to avoidance of threatening contexts, that persist and promote anxiety-like behavior in mice. Here we show that adversity shifted the methylation of enhancers and promoters with intermediate methylation and altered synapse-related gene expression, resulting in epigenetic and transcriptional heterogeneity in the vDG. Exposure to an anxiogenic environment recruited vDG neurons with the most transcriptional alterations. Differentially expressed synapse-relevant genes in ensemble neurons tended to be differentially methylated. Finally, this ensemble exhibited higher activity in threatening than safe environment suggesting a prenatal adversity-induced epigenetic and neurobiological sequence that leads to anxiety.

neuroscience↗

bioRxiv2019

Epigenetically bistable regions across neuron-specific genes govern neuron eligibility to a coding ensemble in the hippocampus

Episodic memories are stored in distributed neurons but how eligibility of individual neurons to coding ensembles is determined remains elusive. We identified thousands of predominantly bistable (CpG methylated or unmethylated) regions within neuronal gene bodies, established during the development of the mouse hippocampal dentate gyrus. Reducing DNA methylation and the proportion of the methylated epialleles at bistable regions compromised novel context-induced neuronal activation and spatial memory. Conversely, increasing methylation and the frequency of the methylated epialleles at bistable regions enhanced intrinsic excitability and spatial memory but impaired spatial working memory, indicating that the developmentally established methylated-unmethylated epiallelic balance at bistable regions is essential for proper neuronal excitability and hippocampal cognitive functions. Single-nucleus profiling revealed the enrichment of specific epialleles from a subset of bistable regions, primarily exonic, in encoding neurons. We propose a model in which epigenetically bistable regions create neuron heterogeneity, and specific constellations of exonic epialleles dictate, via modulating neuronal excitability, eligibility to a coding ensemble.

neuroscience↗

bioRxiv2019

Branched photoswitchable tethered ligands enable ultra-efficient optical control and detection of class C G protein-coupled receptors

The limitations of classical, soluble drugs in terms of subtype-specificity, spatiotemporal precision, and genetic targeting have spurred the development of advanced pharmacological techniques, including the use of covalently-tethered photoswitchable ligands. However, a major shortcoming of tethered photopharmacology is the inability to obtain optical control with a comparable efficacy to the native ligand. To overcome the limitations of photoisomerization efficiency and tethered ligand affinity, we have developed a family of branched photoswitchable compounds to target G protein-coupled metabotropic glutamate receptors (mGluRs). These compounds permit photo-agonism of Gi/o-coupled group II mGluRs with near-complete efficiency relative to saturating glutamate when attached to receptors via a range of orthogonal, multiplexable modalities including SNAP-, CLIP-, and Halo-tags, as well as via receptor-targeting nanobodies. Through a chimeric approach, branched ligands also allow efficient optical control of Gq-coupled mGluR5 with precise, dynamic subcellular targeting. Finally, branched ligands enabled the development of dual photoswitch-fluorophore compounds that allow simultaneous imaging and manipulation of receptors via the same attachment point. Together this work provides a new design framework for photoswitchable ligands and demonstrates a toolset suitable for quantitative, mechanistic study of neuromodulatory receptors at the molecular, cellular and circuit levels.

bioengineering↗