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Phippen, M. E.

Publications and source records attributed to Phippen, M. E..

3 recordsLinked to original sources

Pennycress (Thlaspi arvense L.) Seed Persistence in the Field After Two Years

Field pennycress (Thlaspi arvense L.), is a new oilseed winter annual crop being investigated as a source of biofuel in the United States. The purpose of this study is to assess long term survivability and dormancy of both wild-type pennycress and gene-edited golden pennycress seed. Seeds from one wild type and three gene-edited golden types that carried an edit to TT8 gene were buried at 2 cm and 15 cm depths under well-drained and poorly-drained field conditions. The seeds were exhumed at 2, 4, 6, 12, 18, and 24 months after burial and germinated to determine the viability of the seed over time. All golden seeded gene-edited lines decreased to 0% germination by 6 months while the wild black seeded variety ARV1 retained almost 60% germination after 2 years. A significant difference was seen in the ARV1 survival in the well- drained field but not in the poorly-drained field. However, there was no significant difference in seed viability for burial depth in the well-drained field but there was significant difference for burial depth in the poorly-drained field. These results indicate that gold seeded varieties carrying the edit to TT8 through gene-editing have dramatically decreased the survivability of the seed in the seedbank. Reduced survivability will greatly assist in the adoption of golden pennycress as a new viable off-season crop in the Midwest without concerns of adding to the seedbank or serving as weed pressure in primary crops.

genetics↗

Creating a new oilseed crop, pennycress, by combining key domestication traits using CRISPR genome editing

Considerable offseason farmland lays fallow because there are few crops that can profitably fit between primary crops. To remedy, we employed CRISPR genome editing to the freeze-tolerant, rapid cycling wild Brassica, Thlaspi arvense L. (field pennycress). High-yielding domesticated pennycress varieties were created having seed compositions comparable to "double low" canola (low erucic acid and glucosinolate). Seed glucosinolate content was reduced 75 % by combining mutations in R2R3-MYB (MYB28) and bHLH MYC (MYC3) transcription factors. Pennycress weediness was greatly reduced by knockout of the bHLH transcription factor TRANSPARENT TESTA8 (TT8), lowering seed dormancy and seed coat protections thereby mitigating pennycress re-emergence in fields. Domesticated pennycress offers farmers a profitable, low-carbon-intensity intermediate crop that confers ecosystem benefits while producing grain for renewable fuels and enhanced food security.

genetics↗

Morpho-physiological and transcriptomic responses of field pennycress to waterlogging

Field pennycress (Thlaspi arvense) is a new biofuel winter annual crop with extreme cold hardiness and a short life cycle, enabling off-season integration into corn and soybean rotations across the Midwest. Pennycress fields are susceptible to winter snow melt and spring rainfall, leading to waterlogged soils. The objective of this research was to determine if waterlogging during the reproductive stage had a significant effect on gene expression, morphology, physiology, recovery, and yield of two pennycress lines (SP32-10 and MN106). In a controlled environment, total pod number, shoot/root dry weight, and total seed count/weight were significantly reduced in SP32-10 in response to waterlogging, whereas primary branch number, shoot dry weight, and single seed weight were significantly reduced in MN106. This indicated waterlogging had a greater negative impact on seed yield in SP32-10 than MN106. The number of differentially expressed genes (DEGs) between waterlogged and control roots were doubled in MN106 (3,424) compared to SP32-10 (1,767). Functional enrichment analysis of upregulated DEGs revealed Gene Ontology (GO) terms associated with hypoxia and decreased oxygen, with genes in these categories involved in alcoholic fermentation and glycolysis. Interestingly, MN106 waterlogged roots exhibited significant stronger upregulation of these genes than SP32-10. Additionally, downregulated DEGs revealed GO terms associated with cell wall biogenesis and secondary metabolite biogenesis, indicating suppressed growth and energy conservation. Together, these results reveal the reconfiguration of cellular and metabolic processes in response to the severe energy crisis invoked by waterlogging in pennycress.

plant biology↗