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Petruzela, J.

Publications and source records attributed to Petruzela, J..

2 recordsLinked to original sources

Grazing and mowing enhance aquatic macroinvertebrate diversity of small artificial ponds in eutrophic landscape

Artificial pond construction is widely used in wetland restoration, yet biodiversity outcomes depend strongly on design and subsequent management. We tested how different regimes (grazing, mowing, and no management) influence habitat structure, water conditions, and aquatic macroinvertebrate diversity in newly excavated experimental ponds within an eutrophic wetland in South Moravia (Czechia). Across four focal groups (Mollusca, Odonata, Coleoptera, Heteroptera), we observed rapid colonisation of the newly built ponds. Species richness and densities rose during early development, dropped after drying events, and then partially recovered, indicating repeated "resetting" of communities under fluctuating hydrology. Periodic drying also prevented fish stock establishment. Management significantly affected species composition and both grazed and mowed ponds displayed higher densities (abundances) than controls, but differed only slightly in terms of species richness. The grazed ponds were characterised by high sunlight exposure, reduced reed dominance, and trampling-generated high littoral heterogeneity. These ponds showed highest numbers of taxa adapted to shallow and warm waterbodies, muddy substrate, semiaquatic microhabitats, or newly emerged and disturbed habitats. The mowed ponds promoted dense submergent vegetation, supporting Odonata representation and other taxa requiring aquatic vegetation. The control ponds remained highly shaded by high-grown reed, organic-matter rich, hosting a set of taxa tolerant of low-light, low-oxygen conditions. At the wetland scale, multiple small ponds increased overall diversity through high between-pond heterogeneity. Our results highlight that pond construction alone is insufficient for wetland restoration: follow-up long-term management regimes, especially extensive grazing, can rapidly generate structural heterogeneity and sustain diverse aquatic invertebrate assemblages in eutrophic wetlands.

ecology↗

diemr: Genome polarisation for detecting barriers to geneflow in R

O_LISemi-permeable barriers to geneflow in principle allow distantly related organisms to capture and exchange pre-adapted genes potentially speeding adaptation. However, describing barriers to geneflow on a genomic scale is non-trivial. C_LIO_LIWe extend classic diagnostic allele counting measures of geneflow across a barrier to the case of genome-scale data. Diagnostic index expectation maximisation (diem) polarises the labelling of bistate markers with respect to the sides of a barrier. An initial state of ignorance is enforced by starting with randomly generated marker polarisations. This means there is no prior on population or taxon membership of the genomes concerned. Using a deterministic data labelling, small numbers of classic diagnostic markers can be replaced by large numbers of markers, each with a diagnostic index. Individuals hybrid indices (genome admixture proportions) are then calculated genome wide conditioned on marker diagnosticity; within diploid, haplodiploid and/or haploid genome compartments; or indeed over any subset of markers, allowing classical cline width/barrier strength comparisons along genomes. Along-genome barrier strength hetero-geneity allows for barrier regions to be identified. Further, blocks of genetic material that have introgressed across a barrier are easily identified with high power. C_LIO_LIdiem indicates panmixis among Myotis myotis bat genomes, with a barrier separating low data quality outliers. In a Mus musculus domesticus/Mus spretus system, diem adds multiple introgressions of olfactory (and vomeronasal) gene clusters in one direction to previous demon-strations of a pesticide resistance gene introgressing in the opposite direction across a strong species barrier. C_LIO_LIdiem is a genomes analysis solution which scales over reduced representation genomics of thousands of markers to treatment of all variant sites in large genomes. While the method lends itself to visualisation, its output of markers with barrier-informative annotation will fuel research in population genetics, phylogenetics and association studies. diem can equip such downstream applications with millions of informative markers. C_LI

bioinformatics↗