Biology subjects

Peters, E.

Publications and source records attributed to Peters, E..

11 recordsLinked to original sources

bioRxiv2026

Balancing Lucidity: Muscle and Vestibular Stimulation for Lucid Dream Induction

Lucid dream (LD) induction using external sensory stimulation has most commonly relied on distal cues such as lights or auditory signals, with mixed success rates. In this study, we investigated whether more direct bodily stimulation targeting the muscle and vestibular systems could influence LD induction. We compared electrical muscle stimulation (EMS) and galvanic vestibular stimulation (GVS), each combined with a two-week cognitive training protocol including dream journaling, reality checks, and association training. Twenty-eight participants (14 per group) completed two counterbalanced morning naps: one with stimulation (STIM) during REM sleep and with one sham-stimulation control (SHAM). EMS and GVS stimulation did not lead to increased incorporation of the stimulus. Lucidity rates were high in both EMS conditions, highlighting the substantial role of elevated baseline lucidity in induction studies, cognitive training, and expectation effects. In contrast, GVS stimulation significantly increased externally rated lucidity and DLQ questionnaire scores compared to control. Overall, the findings indicate that galvanic vestibular stimulation can increase dream lucidity. Future work should further examine the mechanisms by which vestibular stimulation influences dream awareness and its potential role in lucid dream induction. O_FIG O_LINKSMALLFIG WIDTH=191 HEIGHT=200 SRC="FIGDIR/small/711028v1_ufig1.gif" ALT="Figure 1"> View larger version (86K): org.highwire.dtl.DTLVardef@7de78forg.highwire.dtl.DTLVardef@1ed7628org.highwire.dtl.DTLVardef@e84964org.highwire.dtl.DTLVardef@2a5f5e_HPS_FORMAT_FIGEXP M_FIG C_FIG

neuroscience↗

bioRxiv2026

Waking Up in the Dream Lab: A Lab-Based Lucid Dream Induction Paradigm Using Virtual Reality and Sensory Stimulation

Lucid dreaming (LD), during which the dreamer is aware that they are dreaming, is frequently induced in laboratory settings by delivering sensory cues during rapid eye movement (REM) sleep. These cues should be incorporated into ongoing dreams and can trigger reflective awareness. This approach relies on the continuity between waking experiences and dream content. In sleep laboratories, participants often dream of the experimental setting itself (lab dreaming), providing a predictable context in which lucidity may emerge. The present studies leveraged this phenomenon by explicitly training participants to associate the sleep laboratory with reflective awareness prior to sleep. Across three studies (total N = 101), participants completed a morning nap following verbal LD instructions and presleep audio designed to prime recognition of the laboratory context in dreams. In addition, conditions included immersive virtual reality (VR) rehearsal of the laboratory environment, VR combined with haptic stimulation (HS) during REM sleep, or VR containing subtle fake system errors intended to prompt reflective checking. LD frequency was assessed through external ratings of signal-verified LD (SVLD) dream reports. Lucidity rates were high across all conditions, with approximately 40-45% of dreams externally rated as lucid and 11%-32% SVLDs occurring in every group. However, neither VR rehearsal, haptic stimulation, nor implicit VR errors increased lucidity relative to the baseline laboratory induction procedure. Exploratory analyses investigated the overlap between laboratory dreaming, false awakenings (FAs), and lucidity. These findings suggest that explicit training focused on the predictable context of the sleep laboratory may already provide a powerful pathway to lucidity, with additional technological manipulations offering limited benefit under a single-nap protocol. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=140 SRC="FIGDIR/small/711049v2_ufig1.gif" ALT="Figure 1"> View larger version (47K): org.highwire.dtl.DTLVardef@8f2327org.highwire.dtl.DTLVardef@14cfbaeorg.highwire.dtl.DTLVardef@11f9bbforg.highwire.dtl.DTLVardef@2a57bf_HPS_FORMAT_FIGEXP M_FIG C_FIG

neuroscience↗

bioRxiv2025

The titin N2A-MARP signalosome constrains muscle longitudinal hypertrophy in response to stretch

Titin-based mechanosensing is a key driver of trophic signaling in muscle, yet the downstream pathways linking titin sensing to muscle remodeling remain poorly understood. To investigate these signaling mechanisms, we utilized unilateral diaphragm denervation (UDD), an in vivo model that induces titin-stiffness-dependent hypertrophy via mechanical stretch. Using UDD in rats and mice, we characterized the longitudinal hypertrophic response and distinguished stretch-induced signaling from denervation effects by performing global transcriptomic and proteomic analyses following UDD and bilateral diaphragm denervation (BDD) in rats. Our findings identified upregulation of titin-associated muscle ankyrin repeat proteins (MARPs). Subsequent phosphorylation enrichment mass spectrometry in mouse diaphragm highlighted the involvement of the N2A-element. UDD in MARP knockout (KO) mice resulted in enhanced longitudinal hypertrophy, with Western blot analysis revealing activation of the mTOR pathway. Furthermore, pharmacological inhibition of mTORC1 with rapamycin suppressed longitudinal hypertrophy, demonstrating that mTOR signaling regulates titin-mediated hypertrophic growth in a MARP-dependent manner. These findings establish MARPs as key modulators of titin-based mechanotransduction and highlight mTORC1 as a central regulator of longitudinal muscle hypertrophy.

physiology↗

bioRxiv2025

Cation-controlled assembly, activity, and organisation of biomimetic DNA receptors in synthetic cell membranes

Biological cells use cations as signalling messengers to regulate a variety of responses. Linking cations to the functionality of synthetic membranes is thus crucial to engineering advanced biomimetic agents, such as synthetic cells. Here, we introduce bio-inspired DNA-based receptors that exploit non-canonical G-quadruplexes for cation-actuated structural and functional responses in synthetic lipid membranes. Membrane confinement grants cationdependent control over receptor assembly and, when supplemented with hemin co-factors, their peroxidase DNAzyme activity. Cationmediated control extends to receptor lateral distribution to localise DNA-based catalysis within phase-separated membrane domains of model synthetic cells, imitating the localisation of multimeric membrane complexes to signalling hubs in living cells. Our modular strategy paves the way for engineering from the bottom-up cation-responsive pathways for sensing, signalling, and communication in synthetic cellular systems.

biophysics↗

bioRxiv2025

EEG Microstates reveal distinct network dynamics in lucid and non-lucid REM sleep

During lucid dreaming, the dreamer is aware that they are dreaming. In past years, numerous studies have explored the characteristics of lucid dreams, which link lucid dreams to vivid visual perception, positive emotions, and wake-like metacognition and executive functions. To determine brain network activity associated with the conscious experience during lucid dreaming, we analyzed 39 sleep recordings (non-lucid REM vs. lucid REM) with 32-channel polysomnography from 8 lucid dreamers, using EEG microstate analysis. We found that microstates A and G dominated during lucid REM sleep compared to non-lucid REM sleep, and microstates B, C, and D dominated during non-lucid REM sleep compared to lucid REM sleep. We explored the correlation of our microstate maps with previous findings based on topographical similarities of the microstate maps in our study. This suggests that in our study, microstate A might be associated with emotional processing, microstate B with visual processing, microstate C with salience network activity, microstate D with executive functions, and microstate G with the default mode network. Our results suggest that lucidity during REM sleep is associated with increased self-visualization, metacognition, and executive processing, along with decreased emotional processing and reduced default mode network activity. Additionally, we found the inverse relationship between the presence of microstates/networks associated with regions that serve specific functions and evidence for the function being used. This might indicate the inhibitory function of the EEG microstates during sleep. Our study provides novel insight into the distinct network dynamics in lucid and non-Lucid REM sleep.

neuroscience↗

bioRxiv2025

Juggling the Limits of Lucidity: Searching for Cognitive Constraints in Dream Motor Practice

Lucid dreaming (LD), during which the dreamer becomes aware of the dream state, offers a unique opportunity for a variety of applications, including motor practice, personal well-being, and nightmare therapy. However, these applications largely depend on a dreamers ability to control their dreams. While LD research has traditionally focused on induction techniques to increase dream frequency, the equally crucial skill of dream control remains underexplored. This study provides an initial investigation into the mechanisms of dream control and its potential influencing factors. We specifically examined whether a complex motor skill--juggling--could be performed within a lucid dream, creating a particularly challenging lucid dream task, which calls for a high level of dream control. Eight healthy participants (aged 24-50) underwent overnight polysomnography (PSG) at the University of Berns Institute for Sports Science, provided detailed dream reports, and completed questionnaires assessing dream control, self-efficacy, personality traits, mindfulness, motivation, and intention setting. Of these, four participants experienced lucid dreams, and of these, two demonstrated high dream control with successful LD juggling attempts. Trait differences between non-lucid and lucid dreamers in the lab were examined, with a focus on low-to-no dream control versus high dream control among the lucid dreamers. The two lucid dream juggling attempts are described in detail, providing insight into the challenges of executing complex tasks within a lucid dream. While this study lacks in sample size, it highlights the potential roles of many psychological traits, such as belief, motivation, and self-efficacy, in shaping dream control abilities. This study helps to lay the groundwork for future research aimed at investigating lucid dream control and therefore optimizing LD applications in therapy, sports training, and cognitive science.

neuroscience↗

bioRxiv2024

A Comparative Study of Muscular, Vestibular, and Haptic Stimulation on Dream Incorporation

The connection between the dreamed body and the real physical body remains a subject of ongoing investigation. This study explored how the dreamed body responds to somatosensory stimulation of the physical body, aiming to shed light on the sensory processes that shape our dreaming experiences. We employed a novel within-subject design to compare the incorporation of three different types of bodily stimuli--electrical muscular, galvanic vestibular, and haptic vibration--into dream content, alongside a control sham condition for each stimulus. In total, 24 participants spent one adaptation night, followed by three consecutive test nights in the sleep laboratory. REM awakenings, after sham or stimulation periods, were carried out for dream report collection. In total, 165 dream reports were collected across conditions. While dream incorporation was observed across the three stimulation methods, it occurred equally in both the stimulation and sham conditions for all three modalities. These findings highlight broader methodological challenges in dream incorporation research and raise concerns about potential confounding factors affecting the interpretation of results. Future research with larger sample sizes is needed to detect smaller effect sizes and fully understand the influence of these somatosensory stimuli on dream content. This study employed a rigorous experimental approach to exploring dream incorporation and addressed many methodological challenges in this area. We further suggest areas of improvement to optimize dream incorporation of different sensory modalities. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=164 SRC="FIGDIR/small/626974v1_ufig1.gif" ALT="Figure 1"> View larger version (57K): org.highwire.dtl.DTLVardef@19dd9cdorg.highwire.dtl.DTLVardef@462ac4org.highwire.dtl.DTLVardef@a1b33borg.highwire.dtl.DTLVardef@1fe0596_HPS_FORMAT_FIGEXP M_FIG C_FIG

neuroscience↗

bioRxiv2023

Incorporation of 5 methylcytidine alleviates innate immune response to self-amplifying RNA vaccine

In order to improve vaccine effectiveness and safety profile of existing synthetic RNA-based vaccines, we have developed a self-amplifying RNA (saRNA)-based vaccine expressing membrane-anchored receptor binding domain (RBD) of SARS-CoV-2 S protein (S-RBD) and have demonstrated that a minimal dose of this saRNA vaccine elicits robust immune responses. Results from a recent clinical trial with 5-methylcytidine (5mC) incorporating saRNA vaccine demonstrated reduced vaccine-induced adverse effects while maintaining robust humoral responses. In this study, we investigate the mechanisms accounting for induction of efficient innate and adaptive immune responses and attenuated adverse effects induced by the 5mC-incorporated saRNA. We show that the 5mC-incorporating saRNA platform leads to prolonged and robust expression of antigen, while induction of type-I interferon (IFN-I), a key driver of reactogenicity, is attenuated in peripheral blood mononuclear cells (PBMCs), but not in macrophages and dendritic cells. Interestingly, we find that the major cellular source of IFN-I production in PBMCs is plasmacytoid dendritic cells (pDCs), which is attenuated upon 5mC incorporation in saRNA. In addition, we demonstrate that monocytes also play an important role in amplifying proinflammatory responses. Furthermore, we show that the detection of saRNA is mediated by a host cytosolic RNA sensor, RIG-I. Importantly, 5mC-incorporating saRNA vaccine candidate produced robust IgG responses against S-RBD upon injection in mice, thus providing strong support for the potential clinical use of 5mC-incorporating saRNA vaccines.

immunology↗

bioRxiv2021

Whole Genome and Exome Sequencing Reference Datasets from A Multi-center and Cross-platform Benchmark Study

With the rapid advancement of sequencing technologies in the past decade, next generation sequencing (NGS) analysis has been widely applied in cancer genomics research. More recently, NGS has been adopted in clinical oncology to advance personalized medicine. Clinical applications of precision oncology require accurate tests that can distinguish tumor-specific mutations from errors or artifacts introduced during NGS processes or data analysis. Therefore, there is an urgent need to develop best practices in cancer mutation detection using NGS and the need for standard reference data sets for systematically benchmarking sequencing platforms, library protocols, bioinformatics pipelines and for measuring accuracy and reproducibility across platforms and methods. Within the SEQC2 consortium context, we established paired tumor-normal reference samples, a human triple-negative breast cancer cell line and a matched normal cell line derived from B lymphocytes. We generated whole-genome (WGS) and whole-exome sequencing (WES) data using 16 NGS library preparation protocols, seven sequencing platforms at six different centers. We systematically interrogated somatic mutations in the paired reference samples to identify factors affecting detection reproducibility and accuracy in cancer genomes. These large cross-platform/site WGS and WES datasets using well-characterized reference samples will represent a powerful resource for benchmarking NGS technologies, bioinformatics pipelines, and for the cancer genomics studies.

bioinformatics↗

bioRxiv2019

Establishing reference samples for detection of somatic mutations and germline variants with NGS technologies

We characterized two reference samples for NGS technologies: a human triple-negative breast cancer cell line and a matched normal cell line. Leveraging several whole-genome sequencing (WGS) platforms, multiple sequencing replicates, and orthogonal mutation detection bioinformatics pipelines, we minimized the potential biases from sequencing technologies, assays, and informatics. Thus, our \"truth sets\" were defined using evidence from 21 repeats of WGS runs with coverages ranging from 50X to 100X (a total of 140 billion reads). These \"truth sets\" present many relevant variants/mutations including 193 COSMIC mutations and 9,016 germline variants from the ClinVar database, nonsense mutations in BRCA1/2 and missense mutations in TP53 and FGFR1. Independent validation in three orthogonal experiments demonstrated a successful stress test of the truth set. We expect these reference materials and \"truth sets\" to facilitate assay development, qualification, validation, and proficiency testing. In addition, our methods can be extended to establish new fully characterized reference samples for the community.

bioinformatics↗

bioRxiv2018

Developmental fidelity imposed by the RGL-1 balanced switch mediating opposing signals

The six C. elegans vulval precursor cells (VPCs) are induced to form the 30-30-20-{Gamma}-20-3{degrees} pattern of cell fates with high fidelity. In response to EGF signal, the LET-60/Ras-LIN-45/Raf-MEK-2/MEK-MPK-1/ERK canonical MAP kinase cascade is necessary to induce 1{degrees} fate and synthesis of DSL ligands. In turn, LIN-12/Notch signal is necessary to induce neighboring cells to become 2{degrees}. We previously showed that, in response to lower dose of EGF signal, the modulatory LET-60/Ras-RGL-1/RalGEF-RAL-1/Ral signal promotes 2{degrees} fate in support of LIN-12. In this study we identify two key differences between RGL-1 and RAL-1 functions. First, deletion of RGL-1 confers no overt developmental defects, while previous studies showed RAL-1 to be essential for viability and fertility. From this observation we hypothesize that the developmentally essential functions of RAL-1 are independent of upstream activation. Second, RGL-1 plays opposing and genetically separable roles in VPC fate patterning. RGL-1 promotes 2{degrees} fate via canonical GEF-dependent activation of RAL-1 and 1{degrees} fate via a non-canonical GEF-independent activity. Our genetic epistasis experiments are consistent with RGL-1 functioning in the modulatory 1{degrees}-promoting AGE-1/PI3-Kinase-PDK-1-AKT-1 cascade. Additionally, animals without RGL-1 experience 15-fold higher rates of VPC patterning errors compared to the wild type. Yet VPC patterning in RGL-1 deletion mutants is not more sensitive to environmental perturbations. We propose that RGL-1 functions as a \"Balanced Switch\" that orchestrates opposing 1{degrees}- and 2{degrees}-promoting modulatory cascades to decrease inappropriate fate decisions. We speculate that such switches are broadly conserved but mostly masked by paralog redundancy or essential genes.

genetics↗