Biology subjects

Pesci, A. I.

Publications and source records attributed to Pesci, A. I..

5 recordsLinked to original sources

bioRxiv2026

Theory of Cell Body Lensing and Phototaxis Sign Reversal in "Eyeless" Mutants of Chlamydomonas

Phototaxis of many species of green algae relies upon directional sensitivity of their membrane-bound photoreceptors, which arises from the presence of a pigmented "eyespot" behind them that blocks light passing through the cell body from reaching the photoreceptor. A decade ago it was discovered that the spherical cell body of the alga Chlamydomonas reinhardtii acts as a lens to concentrate incoming light, and that in "eyeless" mutants of Chlamydomonas the consequence of that focused light reaching the photoreceptor from behind is a reversal in the sign of phototaxis relative to the wild type behavior. We present a quantitative theory of this sign reversal by completing a recent simplified analysis of lensing [Yang, et al., Phys. Rev. E 113, 022401 (2026)] and incorporating it into an adaptive model for Chlamydomonas phototaxis. This model shows that phototactic dynamics in the presence of lensing is subtle because of the existence of internal light caustics when the cellular index of refraction exceeds that of water. During each period of cellular rotation about its body-fixed axis, the photoreceptor receives two competing signals: a relatively long, slowly-varying signal from the direct illumination, and a stronger, shorter, rapidly-varying lensed signal. The reversal of the sign of phototaxis is then a consequence of the dominance of the flagellar photoresponse to the signal with the higher time derivative. These features lead to a quantitative understanding of phototaxis sign reversal, including bistability in the direction choice, a prediction that can be tested in single-cell tracking studies of mutant phototaxis.

biophysics↗

bioRxiv2025

Photometric Decision-Making During the Dawn Choruses of Cicadas

We report the first quantitative study of the onset of dawn choruses of cicadas in several natural habitats. A time-frequency analysis of the acoustical signals is used to define an order parameter for the development of collective singing. The ensemble of recordings reveals that the chorus onset times accurately track the changing sunrise times over the course of many weeks, occurring within civil twilight at a solar elevation of -3.8{degrees} {+/-} 0.2{degrees}. Despite day-to-day variations in the amplitude of fully developed choruses, the order parameter data collapse to a common sigmoidal curve when scaled by those amplitudes and shifted by the onset time, revealing a characteristic rise time of [~]60 s for a chorus to reach saturation amplitude. The results are used to obtain the cumulative distribution function of singing as a function of ground illumination, from which is obtained a generalized susceptibility which exhibits a narrow peak with a half-width of [~]12%. The variance of the order parameter exhibits a similar peak, suggesting that a generalized fluctuation-dissipation theorem holds for this system. A model of decision-making under ramps of a control parameter is developed and can achieve a quantitative match to the data. It suggest that sharpness of the susceptibility peak reflects cooperative decision-making arising from acoustic communication.

biophysics↗

bioRxiv2023

How do Cicadas Emerge Together? Thermophysical Aspects of Their Collective Decision-Making

Certain periodical cicadas exhibit life cycles with durations of 13 or 17 years, and it is now generally accepted that such large prime numbers arise evolutionarily to avoid synchrony with predators. Less well explored is the question of how, in the face of intrinsic biological and environmental noise, insects within a brood emerge together in large successive swarms from underground during springtime warming. Here we consider the decision-making process of underground cicada nymphs experiencing random but spatially-correlated thermal microclimates like those in nature. Introducing short-range communication between insects leads to a model of consensus building that maps on to the statistical physics of an Ising model with a quenched, spatially correlated random magnetic field and annealed site dilution, which displays the kinds of collective swarms seen in nature.

biophysics↗

bioRxiv2022

Adaptive phototaxis of Chlamydomonas and the evolutionary transition to multicellularity in Volvocine green algae

A fundamental issue in biology is the nature of evolutionary transitions from unicellular to multicellular organisms. Volvocine algae are models for this transition, as they span from the unicellular biflagellate Chlamydomonas to multicellular species of Volvox with up to 50,000 Chlamydomonas-like cells on the surface of a spherical extracellular matrix. The mechanism of phototaxis in these species is of particular interest since they lack a nervous system and intercellular connections; steering is a consequence of the response of individual cells to light. Studies of Volvox and Gonium, a 16-cell organism with a plate-like structure, have shown that the flagellar response to changing illumination of the cellular photosensor is adaptive, with a recovery time tuned to the rotation period of the colony around its primary axis. Here, combining high-resolution studies of the flagellar photoresponse with 3D tracking of freely-swimming cells, we show that such tuning also underlies phototaxis of Chlamydomonas. A mathematical model is developed based on the rotations around an axis perpendicular to the flagellar beat plane that occur through the adaptive response to oscillating light levels as the organism spins. Exploiting a separation of time scales between the flagellar photoresponse and phototurning, we develop an equation of motion that accurately describes the observed photoalignment. In showing that the adaptive time scale is tuned to the organisms rotational period across three orders of magnitude in cell number, our results suggest a unified picture of phototaxis in green algae in which the asymmetry in torques that produce phototurns arise from the individual flagella of Chlamydomonas, the flagellated edges of Gonium and the flagellated hemispheres of Volvox.

biophysics↗

bioRxiv2018

An Adaptive Flagellar Photoresponse Determines the Dynamics of Accurate Phototactic Steering in Chlamydomonas

Our understanding of phototaxis of biflagellates stems almost exclusively from the model alga Chlamydomonas reinhardtii, via studies of its flagella, light-sensor and steering. However, no comprehensive model linking all these aspects of its physiology and behavior has been constructed and tested experimentally. Here, we develop such a mathematical model by coupling an adaptive flagellar photoresponse to rigid-body dynamics tailored to details of flagellar beating, and corroborate it with experimental data - at the flagellar and tactic levels - to explain the accurate phototactic steering of this alga. We experimentally validate the hypothesized adaptive flagellar photoresponse using high spatio-temporal resolution methodology on immobilized cells, and corroborate the predicted reorientation dynamics of phototactic swimmers using 3D-tracking of free-swimming cells. Finally, we reconfirm, both theoretically and experimentally, that the adaptive nature of the response has peak fidelity at a frequency of about 1.6 Hz, corresponding to the rotation frequency of the cell body.

biophysics↗