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Perkins, P.

Publications and source records attributed to Perkins, P..

3 recordsLinked to original sources

Scalable high-density tactile arenas for measuring ground-contact forces in freely moving animals

Understanding how animals physically interact with their environment is fundamental to studying movement, sensorimotor control, and neurological function. Yet most behavioral measurement systems primarily capture movement and posture, while direct measurements of contact forces often require specialized instrumentation or involve trade-offs among spatial coverage, resolution, and acquisition speed. Here, we introduce a scalable tactile sensing platform that transforms the surface beneath freely moving animals into a high-resolution contact-imaging instrument. By combining modular sensor arrays with adaptive compressive tactile sampling, the platform provides 16,384 tactile sensing elements at 2-mm pitch across a 512 x 128-mm runway, with nominal 1 kHz acquisition. Rather than exhaustively scanning the entire array, the system concentrates measurements around active contacts, enabling high-speed sensing across an extended behavioral surface. Synchronized overhead video and a camera-assisted analysis pipeline enable paw-resolved measurements of contact loading, stance dynamics, footprint morphology, interlimb weight redistribution, and center-of-pressure trajectories. In a longitudinal rat model of sciatic nerve injury, the platform detected reduced loading of the injured hindlimb and increased loading of the contralateral limb, including changes that conventional gait timing measures underestimated. The modular architecture, together with openly available hardware designs, software and data, provides an accessible framework for studying the mechanical interactions underlying freely moving behavior, with potential applications across neuroscience, injury, and motor recovery research.

bioengineering↗

Myomatrix arrays for high-definition muscle recording

Neurons coordinate their activity to produce an astonishing variety of motor behaviors. Our present understanding of motor control has grown rapidly thanks to new methods for recording and analyzing populations of many individual neurons over time. In contrast, current methods for recording the nervous systems actual motor output - the activation of muscle fibers by motor neurons - typically cannot detect the individual electrical events produced by muscle fibers during natural behaviors and scale poorly across species and muscle groups. Here we present a novel class of electrode devices ("Myomatrix arrays") that record muscle activity at unprecedented resolution across muscles and behaviors. High-density, flexible electrode arrays allow for stable recordings from the muscle fibers activated by a single motor neuron, called a "motor unit", during natural behaviors in many species, including mice, rats, primates, songbirds, frogs, and insects. This technology therefore allows the nervous systems motor output to be monitored in unprecedented detail during complex behaviors across species and muscle morphologies. We anticipate that this technology will allow rapid advances in understanding the neural control of behavior and in identifying pathologies of the motor system.

neuroscience↗

A comprehensive macaque fMRI pipeline and hierarchical atlas

Functional neuroimaging research in the non-human primate (NHP) has been advancing at a remarkable rate. The increase in available data establishes a need for robust analysis pipelines designed for NHP neuroimaging and accompanying template spaces to standardize the localization of neuroimaging results. Our group recently developed the NIMH Macaque Template (NMT), a high-resolution population average anatomical template and associated neuroimaging resources, providing researchers with a standard space for macaque neuroimaging (Seidlitz, Sponheim et al., 2018). Here, we release NMT v2, which includes both symmetric and asymmetric templates in stereotaxic orientation, with improvements in spatial contrast, processing efficiency, and segmentation. We also introduce the Cortical Hierarchy Atlas of the Rhesus Macaque (CHARM), a hierarchical parcellation of the macaque cerebral cortex with varying degrees of detail. These tools have been integrated into the neuroimaging analysis software AFNI (Cox, 1996) to provide a comprehensive and robust pipeline for fMRI processing, visualization and analysis of NHP data. AFNIs new @animal_warper program can be used to efficiently align anatomical scans to the NMT v2 space, and afni_proc.py integrates these results with full fMRI processing using macaque-specific parameters: from motion correction through regression modeling. Taken together, the NMT v2 and AFNI represent an all-in-one package for macaque functional neuroimaging analysis, as demonstrated with available demos for both task and resting state fMRI. HighlightsO_LIThe NMT v2, a stereotaxically aligned symmetric macaque template, is introduced. C_LIO_LIA new atlas (CHARM), defined on NMT v2, parcellates the cortex at six spatial scales. C_LIO_LIAFNIs @animal_warper aligns and maps data between monkey anatomicals and templates. C_LIO_LIAFNIs afni_proc.py facilitates monkey fMRI analysis with automated scripting and QC. C_LIO_LIDemos of macaque task and resting state fMRI analysis with these tools are provided. C_LI

neuroscience↗