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Pei, Y.

Publications and source records attributed to Pei, Y..

41 records · Page 3Linked to original sources

KSHV-encoded vCyclin can modulate HIF1α levels to promote DNA replication in hypoxia

The cellular adaptive response to hypoxia, mediated by high HIF1 levels includes metabolic reprogramming, restricted DNA replication and cell division. In contrast to healthy cells, the genome of cancer cells, and Kaposis sarcoma associated herpesvirus (KSHV) infected cells maintains replication in hypoxia. We show that KSHV infection, despite promoting expression of HIF1 in normoxia, can also restricts transcriptional activity, and promoted its degradation in hypoxia. KSHV-encoded vCyclin, expressed in hypoxia, mediated HIF1a cytosolic translocation, and its degradation through a non-canonical lysosomal pathway. Attenuation of HIF1 levels by vCyclin allowed cells to bypass the block to DNA replication and cell proliferation in the hypoxia. These results demonstrated that KSHV utilizes a unique strategy to balance HIF1 levels to overcome replication arrest and induction of the oncogenic phenotype, which are dependent on the levels of oxygen in the microenvironment.

microbiology↗

Sedimentary factories and ecosystem change across the Permian-Triassic Critical Interval (P-TrCI) - insights from the Xiakou area (South China)

The Permian-Triassic mass extinction included a potentially catastrophic decline of biodiversity, but ecosystem change across this event remains poorly characterized. Here we reconstruct sedimentary factories and ecosystem change across the Permian-Triassic Critical Interval (P-TrCI) in the Xiakou area (South China). Six microfacies (MF) were classified. The succession begins with a eukaryote-controlled carbonate factory (MF-1) that passes upward into an organomineralization-dominated carbonate factory (MF-2-3). Organic-rich marls atop these units reflect carbonate factory collapse (MF-4). Organomineralization-driven carbonate formation restarts prior to the Permian-Triassic boundary (MF-5) and subsequently develops into a mixed carbonate factory where organomineralization and biomineralization are almost equally important (MF-6). MF-1 reflects oxygenated shallow water environments. In contrast, MF-2-6 were all deposited in somewhat deeper environments, some of which episodically exhibited elevated salinities, oxygen depletion, and, possibly, euxinic conditions. Our results demonstrate that distinct changes in carbonate production styles, biodiversity, and environmental conditions are not synchronous at Xiakou. Furthermore, the Xiakou record is strikingly different to that of other localities, even from the same area (e.g., the Global Stratotype Section and Point section at Meishan). Together, these findings highlight the enormous complexity of the P-TrCI and calls simplified views of the Permian-Triassic mass extinction into question.

paleontology↗

Offspring performance is well buffered against stress experienced by ancestors

Evolution should render individuals resistant to stress and particularly to stress experienced by ancestors. However, many studies report negative effects of stress experienced by one generation on the performance of subsequent generations. To assess the strength of such transgenerational effects we used a strategy aimed at overcoming the problem of type I errors when testing multiple proxies of stress in multiple ancestors against multiple offspring performance traits, and applied it to a large observational data set on captive zebra finches (Taeniopygia guttata). We combined clear one-tailed hypotheses with steps of validation, meta-analytic summary of mean effect sizes, and independent confirmatory testing. With this approach we assess to what extent offspring performance in adulthood depends on (1) direct effects of own experiences during early development, (2) indirect condition-transfer effects of the early environment experienced by the parents and the grandparents, and (3) beneficial effects of a match between the environments experienced by the offspring and by its parents. Our study shows that drastic differences in early growth conditions (nestling body mass 8 days after hatching varied 7-fold between 1.7 and 12.4 gram) had only moderate direct effects on adult morphology (95%CI: r=0.19-0.27) and small direct effects on fitness traits (r=0.02-0.12). In contrast, we found no indirect effects of parental or grandparental condition (r=-0.017-0.002; meta-analytic summary of 138 effect sizes), and mixed evidence for small benefits of matching environments, as the latter was not robust to confirmatory testing in independent data sets. This study shows that evolution has led to a remarkable robustness of zebra finches against undernourishment and that transgenerational effects are absent. Author SummaryHow the early life conditions of your ancestors might influence your own life, an aspect of epigenetic inheritance, has become a popular topic among evolutionary biologists and has sparked much interest by the general public. Many theoretical and empirical studies have addressed this question, leading to theories of adaptive programming and condition transfer and ideas of epigenetic or genetic organization. Despite the popularity of this topic, however, there is a lack of a standard framework to guide empirical studies, which are at risk of over-interpreting the most significant effects that might emerge by chance alone when conducting a large number of tests. In this study, we used long-term observational data on multiple morphological and life-history traits of hundreds of male and female zebra finches with information on the early life conditions of both the focal birds and their parents and grandparents. This allows us to comprehensively quantify the magnitude of direct and transgenerational effects of early developmental conditions. Our study (1) proposes a standardized statistical framework for future investigations, (2) summarizes the average effect size (in zebra finches) and indicates the sample sizes needed to pick up such an effect, and (3) provides a counter statement to a growing faith in the ubiquity of transgenerational effects despite their limited evolutionary or mechanistic plausibility.

evolutionary biology↗

MRI tracking reveals selective accumulation of stem cell-derived magneto-extracellular vesicles in sites of injury

Human stem-cell-derived extracellular vesicles (EVs) are currently being investigated for cell-free therapy in regenerative medicine applications, but their biodistribution and tropic properties for homing to injured tissues are largely unknown. Here, we labeled EVs with magnetic nanoparticles to create magneto-EVs that can be tracked by magnetic resonance imaging (MRI). Superparamagnetic iron oxide (SPIO) nanoparticles were coated with polyhistidine tags, which enabled purification of labeled EVs by efficiently removing unencapsulated SPIO particles in the solution. The biodistribution of systemically injected human induced pluripotent stem cell (iPSC)-derived magneto-EV was assessed in three different animal models of kidney injury and myocardial ischemia. Magneto-EVs were found to selectively home to the injury sites and conferred substantial protection in a kidney injury model. In vivo MRI tracking of magnetically labeled EVs represents a new powerful method to assess and quantify their whole-body distribution, which may help optimize further development of EV-based cell-free therapy.

bioengineering↗

Proximate causes of infertility and embryo mortality in captive zebra finches

AbstractSome species show high rates of reproductive failure, which is puzzling because natural selection works against such failure in every generation. Hatching failure is common in both captive and wild zebra finches (Taeniopygia guttata), yet little is known about its proximate causes. Here we analyze data on reproductive performance (fate of >23,000 eggs) based on up to 14 years of breeding of four captive zebra finch populations. We find that virtually all aspects of reproductive performance are negatively affected by inbreeding (mean r = -0.117), by an early-starting, age-related decline (mean r = -0.132), and by poor early-life nutrition (mean r = - 0.058). However, these effects together explain only about 3% of the variance in infertility, offspring mortality, fecundity and fitness. In contrast, individual repeatability of different fitness components varied between 15% and 50%. As expected, we found relatively low heritability in fitness components (median: 7% of phenotypic, and 29% of individually repeatable variation). Yet, some of the heritable variation in fitness appears to be maintained by antagonistic pleiotropy (negative genetic correlations) between male fitness traits and female and offspring fitness traits. The large amount of unexplained variation suggests a potentially important role of local dominance and epistasis, including the possibility of segregating genetic incompatibilities.

evolutionary biology↗