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Patra, C.

Publications and source records attributed to Patra, C..

5 recordsLinked to original sources

A Dual-Function Guanidinium Scaffold that Couples Copper Sequestration with Redox Protection in Wilson disease

Wilson disease (WD) is caused due to mutations in the copper ATPase gene ATP7B, that result in accumulation of labile copper pools and the consequent disruption of cellular redox homeostasis through uncontrolled copper-mediated reactive oxygen species generation. Current therapies mainly depend on high-affinity copper chelation to lower metal burden which sometimes also strip copper from cuproproteins and may disturb physiological copper-dependent processes. It also does not directly suppress pathological copper reactivity i.e., free radical generation, a major driver of WD progression. To overcome these limitations, we have rationally designed Gua-Cu-3, a C-symmetric guanidinium-based molecule that can chelate labile copper without metal stripping from cuproproteins due to moderate binding affinity and it has intrinsic antioxidant activity within a single nanosheet-forming supramolecular self-assembly. Spectroscopic, calorimetric, and computational analyses revealed controlled multivalent copper coordination (Kd = 95.4 M) while radical-scavenging and hydroxyl-radical inhibition assays further revealed potent redox-regulatory activity. In cellular models of copper overload, Gua-Cu-3 treatment reduces ATP7B trafficking from trans-Golgi network, confirming effective intracellular copper sequestration. This was accompanied by a marked reduction in oxidative stress, reduction of translocation of Nrf2 in nucleus and of HO-1 expression, thereby limiting lipid peroxidation which leads to restoration of cellular homeostasis, including improved lysosomal integrity, reduced endoplasmic reticulum stress, decreased mitochondrial superoxide levels, and diminished apoptosis. Importantly, the protective effects extended, beyond cultured cells, Gua-Cu-3 attenuates oxidative stress in ATP7B-homolog-deficient C. elegans and rescues copper-induced developmental defects in zebrafish, outperforming D-penicillamine, which is currently in use for Wilson disease management. These findings establish Gua-Cu-3 as a molecularly designed supramolecular copper-reactivity buffer that couples-controlled copper sequestration with redox regulation which is distinct from conventional copper depletion and provides a framework for treating Wilson disease and other disorders associated with metal dyshomeostasis and oxidative stress.

Cell Biology↗

Solvatochromic reporter to image plasma membrane order leaflet by leaflet reveals ahighly asymmetric bilayer locally modulated by transbilayer interactions

The plasma membrane (PM) of cells is an asymmetric bilayer composed of a complex mixture of lipids and proteins. The emergent biophysical properties of its leaflets and their consequence on cellular function remain unexplored owing to the limitation in available probes. In this manuscript, we report on the design and characterisation of a PM-localised solvatochromic probe, C3L, based on the established reporter Laurdan. C3L is retained at the inner-leaflet due to flippase and scramblase activity, as determined by Bovine Serum Albumin-based back exchange experiments. By measuring the Generalized Polarization of C3L we are able to determine membrane order, leaflet-by-leaflet at the PM. Our results reveal that the PM is made of a tightly-packed outer/exofacial-leaflet in contrast to a disordered inner/cytoplasmic-leaflet. This differential packing is established by the maintenance of lipid asymmetry, the presence of specific lipids, Sphingomyelin in the outer-leaflet and Phosphatidylserine at the inner-leaflet, and exaggerated during mesenchymal to epithelial transition. We find spatial signatures of local modulation of the inner leaflet by protein scaffolds which promote trans-bilayer coupling of lipids. C3L thus informs on steady state lipid organisation at the asymmetric membrane while allowing further exploration of spatial regulation of lateral heterogeneity at each leaflet.

cell biology↗

Tri-n-butyl phosphate inhibits neurogenesis and motor functions during embryonic development in zebrafish

Tri-n-butyl phosphate (TBP), an organophosphate ester (OPE), is heavily used as a solvent in synthetic resins, inks, and adhesives and as an antifoaming agent in detergents and emulsion products. Further, it is used as a flame retardant and plasticizer in the fabric and electronics industry. Further, TBP is used to extract uranium, plutonium, and thorium. Thus, widespread uses of TBP in industrialized countries led to the release of TBP and its metabolites, dibutyl phosphate (DBP) and monobutyl phosphate (MBP), in the environment, including air, soil, and water, and get detected in human samples. Accumulating these OPEs over time in humans and other animals may develop toxicological effects. The reports also say OPEs contaminants pass through the mother-fetal transmission route and may affect embryonic development. However, the impact of TBP and its metabolites on vertebrate development has been poorly studied. Ex-Utero development, short generation time, high fecundity, optical transparency, and genetic and physiological similarity to humans make the zebrafish a preferred model for studying vertebrate development, organogenesis, small molecule screening, toxicological evaluation, etc. Thus, we aim to explore the toxic effects of TBP, DBP, and MBP on vertebrate organogenesis and overall embryonic development using zebrafish as a model organism. Our study found that TBP inhibits neural growth resulting in decreased spontaneous movements frequency at 22 and 28 hpf without altering the somite and overall embryonic growth in lower doses. In contrast, in lower concentrations, DBP-treated embryos showed normal neuronal and embryonic development and increased spontaneous movement frequency at 22 and 28 hpf. Further, we found that in higher concentrations, TBP is teratogenic, DBP is lethal to the embryos, and MBP did not show detectable toxic effects in the developing embryos. Altogether, we found that TBP inhibits neurogenesis, and its metabolite DBP is neuroexcitatory during embryonic development. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=86 SRC="FIGDIR/small/564317v1_ufig1.gif" ALT="Figure 1"> View larger version (28K): org.highwire.dtl.DTLVardef@1855d5corg.highwire.dtl.DTLVardef@b470eeorg.highwire.dtl.DTLVardef@623b78org.highwire.dtl.DTLVardef@12e6e8f_HPS_FORMAT_FIGEXP M_FIG C_FIG

developmental biology↗

Active emulsions in living cell membranes driven by contractile stresses and transbilayer coupling

The spatiotemporal organisation of proteins and lipids on the cell surface has direct functional consequences for signaling, sorting and endocytosis. Earlier studies have shown that multiple types of membrane proteins including transmembrane proteins that have cytoplasmic actin binding capacity and lipid-tethered GPI-anchored proteins (GPI-APs) form nanoscale clusters driven by active contractile flows generated by the actin cortex. To gain insight into the role of lipids in organizing membrane domains in living cells, we study the molecular interactions that promote the actively generated nanoclusters of GPI-APs and transmembrane proteins. This motivates a theoretical description, wherein a combination of active contractile stresses and transbilayer coupling drive the creation of active emulsions, mesoscale liquid ordered (lo) domains of the GPI-APs and lipids, at temperatures greater than equilibrium lipid-phase segregation. To test these ideas we use spatial imaging of homo-FRET combined with local membrane order and demonstrate that mesoscopic domains enriched in nanoclusters of GPI-APs are maintained by cortical actin activity and transbilayer interactions, and exhibit significant lipid order, consistent with predictions of the active composite model.

cell biology↗

Acto-myosin driven functional nanoclusters of GPI-anchored proteins are generated by integrin receptor signaling

GPI-anchored protein (GPI-AP) nanoclusters are generated by cortical acto-myosin activity. While our understanding of the physical principles behind this process is emerging, the molecular machinery required for the generation of these nanoclusters is unknown. Here, we show that ligand-mediated membrane receptor signaling triggers nanocluster formation. Both soluble and surface-tethered RGD ligands bind the {beta}1-integrin receptor and activate focal adhesion and src-kinases, resulting in RhoA signaling. This cascade ultimately triggers actin-nucleation via specific formins, driving nanoclustering of both GPI-APs and a model transmembrane protein with an actin-binding domain. Integrin signaling concurrently results in talin mediated activation of vinculin. This is necessary for the coupling of the dynamic actin machinery to the inner leaflet driving GPI-AP nanoclustering. Disruption of GPI-AP nanoclustering in either GPI-anchor remodeling mutants or in cells that express vinculin mutants, provide evidence that these nanoclusters are necessary for activating cell spreading, a hallmark of integrin function.

cell biology↗