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Biology subjects

Ortiz, P.

Publications and source records attributed to Ortiz, P..

5 recordsLinked to original sources

Contrast-dependent response modulation in convolutional neural networks captures behavioral and neural signatures of visual adaptation

Human perception is robust under challenging conditions, for example when sensory inputs change over time. Temporal adaptation in the form of reduced responses to repeated external stimuli is ubiquitously observed in the brain, yet it remains unclear how repetition suppression aids recognition of novel inputs. To clarify this, we collected behavioural and electrocorticography (EEG) measurements while human participants categorized objects embedded in visual noise patterns after first viewing these patterns in isolation, inducing adaptation to the noise stimulus. We furthermore manipulated the availability of object information in the visual input by varying the contrast of the noise-embedded objects. Our results provide convergent behavioral, neural and computational evidence of a benefit of temporal adaptation on sensory representations. Adapting to a noise pattern resulted in overall faster object recognition and better recognition of objects as object contrast increased. These adaptation-induced behavioral improvements were accompanied by more pronounced contrast-dependent modulation of object-evoked EEG responses, and better decoding of object information from EEG activity. To identify potential neural computations mediating the benefits of temporal adaptation on object recognition, we equipped task-optimized deep convolutional neural networks (DCNNs) with different candidate mechanisms to adjust network activations over time. DCNNs with intrinsic adaptation mechanisms, such as additive suppression, best captured contrast-dependent human performance benefits, whilst also showing improved object decoding as a result of adaptation. Finally, adaptation effects in networks that use temporal divisive normalization, a biologically-plausible canonical neural computation, were most robust to spatial shifts, suggesting that temporal adaptation via divisive normalization aids stable representations of time-varying visual inputs. Overall, our results demonstrate how temporal adaptation improves sensory representations and identify candidate neural computations mediating these effects. Author summaryRobust perception is essential for the human brain to detect, process, and act upon new sensory inputs. Temporal adaptation is believed to play a key role in robust sensory processing by allowing neurons to continuously adjust their responses to previous inputs in order to optimize the processing of future inputs. Here, we show that temporal adaptation aids visual object recognition by improving neural representations of object contrast and object category. By emulating temporal adaptation in deep convolutional neural network models with different computational mechanisms, we identify candidate neural computations mediating benefits of temporal adaptation on sensory processing.

neuroscience↗

National seroprevalence and risk factors of bluetongue virus in domestic ruminants in Peru

Bluetongue virus (BTV) is a global infection primarily transmitted among domestic and wild ruminant populations through Culicoides spp. midges. Infection is highly prevalent across temperate and tropical regions; however, significant changes in the global distribution of BTV have been observed in recent years. We aimed to evaluate the national BTV seroprevalence and its risk factors among domestic ruminants (cattle, sheep and goats) in Peru. Ruminant sera (cattle= 3 452, sheep= 2 786 and goats=1 568) were collected using a random, two-stage clustering method and analyzed by c-ELISA. The national BTV seroprevalence was 12.7% (95% CI: 11.00-14.63%) and the seropositivity rate for each species was 19.29% (95% CI: 16.0%-31.1%) in cattle, 8.4 (95% CI: 6.6%-10.5%) in sheep, and 9.2% (95% CI: 5.6%-14.8%) in goats. Bivariate and multiple logistic regression analysis were used to evaluate risk factors for BTV seropositivity and to estimate Odds Ratios (OR) with 95% CI. We found that age, altitude, and maximum temperature were identified as crucial factors influencing the prevalence of BTV seroprevalence in cattle, sheep and goats. Older animals, particularly cattle and goats between 6 and 24 months and above 24 months, exhibited a significantly higher likelihood of BTV infection. Additionally, higher altitudes above 3000 masl played a protective role, reducing the risk of BTV transmission. Furthermore, increased maximum temperatures, especially exceeding 30 {degrees}C, were associated with a greater prevalence of BTV. This study lays the groundwork for identifying BTV serotypes and Culicoides spp. in different regions, including altitudes above 3000 masl, to enhance BTV surveillance in Peru.

microbiology↗

Environmental radiation exposure at Chornobyl has not systematically affected the genomes or mutagen tolerance phenotypes of local worms

The 1986 disaster at the Chornobyl Nuclear Power Plant transformed the surrounding region into the most radioactive landscape known on the planet. Questions remain regarding whether this sudden environmental shift selected for species, or even individuals within a species, that are naturally more resistant to radiation exposure. We collected, cultured, and cryopreserved 298 wild nematodes isolates from areas varying in radioactivity within the Chornobyl Exclusion Zone. We sequenced and assembled genomes de novo for 20 Oschieus tipulae strains, analyzed their genomes for evidence of recent mutation acquisition in the field and saw no evidence of an association between mutation and radiation level at the sites of collection. Multigenerational exposure of each of these strains to several mutagens in the lab revealed that strains vary heritably in tolerance to each mutagen, but mutagen tolerance cannot be predicted based on the radiation levels at collection sites.

genetics↗

In vitro inhibition of H. pylori in a preferential manner using bioengineered L. lactis releasing guided Antimicrobial peptides

ObjectivesTargeted therapies seek to selectively eliminate a pathogen without disrupting the resident microbial community. This is even more important when a pathogen like H. pylori resides in stomach, a sensitive microbial ecosystem. Using a probiotic like Lactococcus lactis and bioengineering it to release a guided Antimicrobial Peptide (AMP) targeted towards the pathogen offers a pathway to specifically knock-out the deleterious species and not disturbing the stomach microbiome. ResultsThree AMPs, Alyteserin, CRAMP and Laterosporulin, were genetically fused to a guiding peptide MM1, which selectively binds to Vacuolating Toxin A (VacA) of H. pylori and cloned into an excretory vector pTKR inside L. lactis. When cultured together in vitro, the L. lactis bioengineered with guided AMPs selectively killed H. pylori when compared to E. coli or Lactobacillus plantarum, as determined by qPCR. Chemically synthesized Alyteserin and MM1-Alyteserin showed similar preferential inhibition of H. pylori when compared against E. coli, with the MIC of MM1-Alyteserin becoming significantly higher for E. coli than Alytserin whereas no such effet was observed against H. pylori. ConclusionsProbiotics bioengineered to excrete guided AMPs can be a novel and useful approach for combating pathogens without endangering the natural microbial flora. Given the wealth of AMPs and guiding ligands, both natural and synthetic, this approach can be adapted to develop a diverse array of chimeric guided AMPs and can be cloned into probiotics to create a safe and effective alternative to conventional chemical antibiotics.

molecular biology↗

In situ treatment of H. pylori infection in mice stomach with bioengineered probiotic bacteria releasing guided Antimicrobial peptides

ObjectivesTargeted therapies seek to selectively eliminate a pathogen without disrupting the resident microbial community. This is even more important when a pathogen like H. pylori resides in stomach, a sensitive microbial ecosystem. Using a probiotic like Lactococcus lactis and bioengineering it to release a guided Antimicrobial Peptide (AMP) targeted towards the pathogen offers a pathway to specifically knock-out the deleterious species and not disturbing the stomach microbiome. ResultsThree AMPs, Alyteserin, CRAMP and Laterosporulin, were genetically fused to a guiding peptide MM1, which selectively binds to Vacuolating Toxin A (VacA) of H. pylori and cloned into an excretory vector pTKR inside L. lactis. When cultured together in vitro, the L. lactis bioengineered with guided AMPs selectively killed H. pylori when compared to E. coli or Lactobacillus plantarum, as determined by qPCR. Chemically synthesized Alyteserin and MM1-Alyteserin showed similar preferential inhibition of H. pylori when compared against E. coli, with the MIC of MM1-Alyteserin becoming significantly higher for E. coli than Alytserin whereas no such effet was observed against H. pylori. ConclusionsProbiotics bioengineered to excrete guided AMPs can be a novel and useful approach for combating pathogens without endangering the natural microbial flora. Given the wealth of AMPs and guiding ligands, both natural and synthetic, this approach can be adapted to develop a diverse array of chimeric guided AMPs and can be cloned into probiotics to create a safe and effective alternative to conventional chemical antibiotics.

molecular biology↗