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Ohkubo, Y.

Publications and source records attributed to Ohkubo, Y..

2 recordsLinked to original sources

Multiple imputation step-selection analysis: Improving estimation accuracy of travel distance accounting for route uncertainty

O_LIUnderstanding animal movement behavior is essential for conservation and elucidating various ecological processes. In particular, assessing habitat suitability is a central theme in movement ecology, traditionally evaluated by estimating travel distances per unit time across diverse environmental conditions based on tracking data. Integrated step selection analysis (iSSA : Avgar et al., 2016) has been most widely applied in conservation studies to estimate animal movements that provide ecosystem services due to its ease of implementation and interpretability. C_LIO_LIBut despite its popularity, iSSA faces a critical issue--it can lead to underestimation of cumulative travel distances because it measures step lengths as conventional straight-line displacements between locations. This is primarily due to the application of linear interpolation between consecutive observed points, which fails to account for unobserved occurrences and non-linear trajectories taken by the individual. C_LIO_LIIn this paper, we propose a novel method to improve the estimation of travel distance in iSSA inspired by multiple imputation, a statistical method for missing data. We tested the extent to which our proposed method, Multiple Imputation Step Selection Analysis (MiSSA), improves the accuracy of step-length estimation (parameters of gamma distribution) compared to conventional iSSA using simulations across various scenarios. We compared the estimation bias and error under landscapes with different spatial autocorrelations (Simulation 1), as well as under various combinations of movement and habitat selection parameters (Simulation 2). In all simulations, MiSSA successfully reduced the estimation bias of the step length and substantially improved the estimation accuracy. In addition, although the coverage rates were comparable, we achieved a substantial reduction in the width of the confidence intervals. C_LIO_LIOur study demonstrates that incorporating missing data statistics into the iSSA framework improves the accuracy of travel distance estimations, which serve as the foundation for evaluating habitat selection. MiSSA maintains the core advantages of iSSA while enabling more accurate estimation of travel distances, even for low-resolution data where movement between sampling intervals is non-linear. We anticipate its broad application across various disciplines, with a primary focus on conservation. C_LI

ecology↗

Integration of shoot-derived polypeptide signals by root TGA transcription factors is essential for survival under fluctuating nitrogen environments

Unlike plants in the field, which experience significant temporal fluctuations in environmental conditions, plants in the laboratory are typically grown in controlled, stable environments. Therefore, signaling pathways evolved for survival in continuously fluctuating environments often remain functionally latent in laboratory settings. Here, we show that TGA1 and TGA4 act as hub transcription factors through which the expression of genes involved in high-affinity nitrate uptake are regulated in response to shoot-derived phloem mobile polypeptides, CEP DOWNSTREAM 1 (CEPD1), CEPD2 and CEPD-like 2 (CEPDL2) as nitrogen (N) deficiency signals, and Glutaredoxin S1 (GrxS1) to GrxS8 as N sufficiency signals. CEPD1/2/CEPDL2 and GrxS1-S8 competitively bind to TGA1/4 in roots, with the former acting as transcription coactivators that enhance the uptake of nitrate, while the latter function as corepressor complexes together with TOPLESS to limit nitrate uptake. Arabidopsis plants deficient in TGA1/4 maintain basal nitrate uptake and exhibit growth similar to wild-type plants in a stable N environment, but were impaired in regulation of nitrate acquisition in response to shoot N demand, leading to defective growth under continuously fluctuating N environments where rhizosphere nitrate ions switch periodically between deficient and sufficient states. TGA1/4 are crucial transcription factors that enable plants to survive under fluctuating and challenging N environmental conditions.

plant biology↗