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Ochiai, K.

Publications and source records attributed to Ochiai, K..

2 recordsLinked to original sources

TANK binding kinase 1 promotes BACH1 degradation through both phosphorylation-dependent and -independent mechanisms without relying on heme and FBXO22

BTB and CNC homology 1 (BACH1) represses the expression of genes involved in the metabolism of iron, heme and reactive oxygen species. While BACH1 is rapidly degraded when it is bound to heme, it remains unclear how BACH1 degradation is regulated under other conditions. We found that FBXO22, a ubiquitin ligase previously reported to promote BACH1 degradation, polyubiquitinated BACH1 only in the presence of heme in a highly purified reconstitution assay. In parallel to this regulatory mechanism, TANK binding kinase 1 (TBK1), a protein kinase that activates innate immune response and regulates iron metabolism via ferritinophagy, was found to promote BACH1 degradation when overexpressed in 293T cells. While TBK1 phosphorylated BACH1 at multiple serine and threonine residues, BACH1 degradation was observed with not only the wild-type TBK1 but also catalytically impaired TBK1. The BACH1 degradation in response to catalytically impaired TBK1 was not dependent on FBXO22 but involved both autophagy-lysosome and ubiquitin-proteasome pathways judging from its suppression by using inhibitors of lysosome and proteasome. Chemical inhibition of TBK1 in hepatoma Hepa1 cells showed that TBK1 was not required for the heme-induced BACH1 degradation. Its inhibition in Namalwa B lymphoma cells increased endogenous BACH1 protein. These results suggest that TBK1 promotes BACH1 degradation in parallel to the FBXO22- and heme-dependent pathway, placing BACH1 as a downstream effector of TBK1 in iron metabolism or innate immune response.

biochemistry↗

Properties of rhizosphere soil associated with herbaceous plant roots analyzed using small-scale protocols

The rhizosphere, which is the region of soil adjacent to plant roots, is affected by the activities of both plant roots and associated microorganisms which cause changes in soil properties including nutrient mineral composition. Accordingly, the actual availability of plant nutrients may not be the same as that estimated on the basis of bulk soil analysis. However, the extent and manner in which the availability of plant nutrients in bulk and rhizosphere soils differ remain unclear. Therefore, the present study defined the rhizosphere as the soil adhered to plant roots, established a set of small-scale protocols for analyzing the nutrient minerals of small soil samples, and then characterized the rhizosphere soil of sorghum, Sorghum bicolor (L.) Moench. The mineral contents of the bulk and rhizosphere soil differed significantly, with nutrient contents generally greater in the rhizosphere, and particularly remarkable accumulation was observed in regards to ammonium ion and exchangeable potassium concentrations. Such accumulation might be due, in part, to the greater per weight surface areas of rhizosphere soil particles, but other mechanisms, including the accumulation of organic matter, could also be involved.

plant biology↗