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O'Brien, E. T.

Publications and source records attributed to O'Brien, E. T..

4 recordsLinked to original sources

A Model for the Diversity Explosion Fundamental to Metastasis

Most deaths from cancer are caused by their metastases. Along with the ability to evade the immune system and to invade and disrupt very different tissue environments, metastases usually develop resistance to whatever therapeutic approaches are tried. Their extreme adaptability requires a diversity of traits from which natural selection can choose, but current models, such as the epithelial-to-mesenchymal transition (EMT), do not directly address how this diversity is generated. We observed that single cell clones of Panc1 human pancreas cancer cells that had had crispR knock outs (KO) of the gene for activin-like kinase 4 (ALK4) had developed a markedly diverse morphology. Time-lapse and fluorescence microscopy, FACS analysis and mitotic chromosome squashes provided evidence that the cells diversify profoundly in size, behavior and chromosome number. This diversity appears to develop through cytokinesis failure, the generation of very large multinuclear cells that exhibit a high range of nuclear configurations, coupled with continued cell divisions that sometimes generate three, four, and more daughter cells in one cell division. This astounding activity often resulted in cells that were much smaller than the normal Panc1 cells, and indirect evidence suggests they were significantly sub-ploidy, yet underwent regular cell divisions. A subset of the smaller cells were highly motile, and were observed to sometimes merge together or even into larger cells. This phenomenon could provide an unappreciated venue for transferring mutated genes, chromosome fragments, whole chromosomes or sets of chromosomes into an invaded cell. We suggest that these observations may be a serendipitous illustration of the missing link between the genetic mutations implicated in the development of primary carcinoma, and the extreme genomic diversity that characterizes malignant metastases. Graphical SummarySingle cell clones of Panc 1 ALK4 KO cultures changed from largely uniformly epithelioid in character (A) to cultures composed of an unexpectedly wide variety of cells, and that this variety is not explained by the traditional "EMT" (epithelial-to-mesenchymal-transition). These cells range from very small to very large, have varying degrees of motility, chromosome number, and cell division behavior. We describe the new morphologies and behaviors, and present time lapse movies and microscopic evidence that help explain the evolution of this variety. These new cell types integrate into colonies where the smallest cells gather into spherical masses (D). We believe that the heterogeneity in genomic content and behavior provides the variety needed for natural selection to select cells that are resistant to most treatments for metastatic cancers.

cancer biology↗

Combined Selective Plane Illumination Microscopy and FRAP maps intranuclear diffusion of NLS-GFP

Since its initial development in 1976, fluorescence recovery after photobleaching (FRAP) has been one of the most popular tools for studying diffusion and protein dynamics in living cells. Its popularity is derived from the widespread availability of confocal microscopes and the relative ease of the experiment and analysis. FRAP, however, is limited in its ability to resolve spatial heterogeneity. Here, we combine selective plane illumination microscopy (SPIM) and FRAP to create SPIM-FRAP, wherein we use a sheet of light to bleach a 2D plane and subsequently image the recovery of the same image plane. This provides simultaneous quantification of diffusion or protein recovery for every pixel in a given 2D slice, thus moving FRAP measurements beyond these previous limitations. We demonstrate this technique by mapping intranuclear diffusion of NLS-GFP in live MDA-MB-231 cells; SPIM-FRAP proves to be an order of magnitude faster than fluorescence correlation spectroscopy (FCS) based techniques for such measurements. We observe large length-scale (> ~500 nm) heterogeneity in the recovery times of NLS-GFP, which is validated against simulated data sets. 2D maps of recovery times were correlated with fluorescence images of H2B to address conflicting literature on the role of chromatin in diffusion of small molecules. We observed no correlation between histone density and diffusion. We developed a diffusion simulation for our SPIM-FRAP experiments to compare across techniques; our measured diffusion coefficients are on the order of previously reported results, thus validating the quantitative accuracy of SPIM-FRAP relative to well-established methods. With the recent rise of accessibility of SPIM systems, SPIM-FRAP is set to provide a simple and quick means of quantifying the spatial distribution of protein recovery or diffusion in living cells. Statement of SignificanceWe developed selective plane illumination microscopy combined with fluorescence recovery after photobleaching (SPIM-FRAP) to perform simultaneous FRAP measurements for each pixel in a 2D slice. This technique has the potential to be implemented on almost any light sheet microscope with minimal software development. FRAP studies were previously unable to resolve spatial heterogeneity and FCS techniques require minute-long acquisition times; SPIM-FRAP remedies both of these issues by generating FRAP-based diffusion maps in 4 seconds. This technique can easily be expanded to 3D by photobleaching a single plane and performing light sheet volumetric imaging, which has the benefits of minimal photobleaching and phototoxicity for studying long-term protein turnover. Furthermore, SPIM-FRAP of slowly-recovering structures enables characterization of spatial distortions to measure intracellular stresses.

biophysics↗

Combined Atomic Force Microscope and Volumetric Light Sheet System for Mechanobiology

The central goals of mechanobiology are to understand how cells generate force and how they respond to environmental mechanical stimuli. A full picture of these processes requires high-resolution, volumetric imaging with time-correlated force measurements. Here we present an instrument that combines an open-top, single-objective light sheet fluorescence microscope with an atomic force microscope (AFM), providing simultaneous volumetric imaging with high spatiotemporal resolution and high dynamic range force capability (10 pN - 100 nN). With this system we have captured lysosome trafficking, vimentin nuclear caging, and actin dynamics on the order of one second per volume. To showcase the unique advantages of combining Line Bessel light sheet imaging with AFM, we measured the forces exerted by a macrophage during Fc{gamma}R-mediated phagocytosis while performing both sequential two-color, fixed plane and volumetric imaging of F-actin. This unique instrument allows for a myriad of novel studies investigating the coupling of cellular dynamics and mechanical forces.

biophysics↗

VIEW-MOD: A Versatile Illumination Engine With a Modular Optical Design for Fluorescence Microscopy

We developed VIEW-MOD (Versatile Illumination Engine With a Modular Optical Design): a compact, multi-modality microscope, which accommodates multiple illumination schemes including variable angle total internal reflection, point scanning and vertical/horizontal light sheet. This system allows combining and flexibly switching between different illuminations and imaging modes by employing three electrically tunable lenses and two fast-steering mirrors. This versatile optics design provides control of 6 degrees of freedom of the illumination source (3 translation, 2 tilt, and beam shape) plus the axial position of the imaging plane. We also developed standalone software with an easy-to-use GUI to calibrate and control the microscope. We demonstrate the applications of this system and software in biosensor imaging, optogenetics and fast 3D volume imaging. This system is ready to fit into complex imaging circumstances requiring precise control of illumination and detection paths, and has a broad scope of usability for a myriad of biological applications.

bioengineering↗