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Novelletto, A.

Publications and source records attributed to Novelletto, A..

2 recordsLinked to original sources

LAYERED GENOMIC COMPOSITION AND LINGUISTIC CONTINUITY IN GRECIA SALENTINA

Grecia Salentina (GS) is the label assigned to a geographic area in Southern Italy where a Greek dialect has historically been spoken. The origins of this Greek-speaking community, whether dating from ancient or Medieval settlement, are a controversial and essentially unsolved issue. To evaluate which historical-linguistic scenario is best supported on genomic grounds, we used whole genome sequencing of 27 GS natives and 21 controls, embedding them in a 799 modern samples dataset in which Greece and Anatolia were evenly represented, an uncommon feature in the genomic literature on the area. We considered different aspects of the genetic structuring, at different spatial and temporal scales. Analyses also included 4021 ancient samples from the literature. All analyses pointed to the same conclusion: the GS genomic profile displays the same characteristic features of the rest of Southern Italy, with no definite evidence for a single source population from outside Italy. Correspondingly, we detected strong genetic connectivity among GS municipalities and between GS and the rest of Italy. Only a subset of our analyses suggested a slightly increased affinity of GS with Greece, or with the Anatolian peninsula. These results indicate that GS has been all but a genetically closed community, and that the Greek language did not act as a barrier to gene flow. By endorsing a ''transient mobility model'' we support the most recent linguistic hypothesis: the prolonged resilience of the Greek language in GS, maintained in situ and periodically rejuvenated through recurrent external inputs from the Greek and Byzantine worlds.

genetics↗

Human lncRNAs harbor conserved modules embedded in different sequence contexts

We analyzed the structure of human long non-coding RNA (lncRNAs) genes to investigate whether the non-coding transcriptome is organized in modular domains, as is the case for protein-coding genes. To this aim, we compared all known human lncRNA exons and identified 340 pairs of exons with high sequence and/or secondary structure similarity but embedded in a dissimilar sequence context. We grouped these pairs in 106 clusters based on their reciprocal similarities. These shared modules are highly conserved between humans and the four great ape species, display evidence of purifying selection and likely arose as a result of recent segmental duplications. Our analysis contributes to the understanding of the mechanisms driving the evolution of the non-coding genome and suggests additional strategies towards deciphering the functional complexity of this class of molecules. Author summaryThe Human genome includes more than 18,000 genes coding for RNAs that are not translated into proteins, called long non-coding RNAs (lncRNA). Mounting evolutionary and experimental evidence shows that a large amount of these RNAs have a specific function, mainly as regulators of a diverse set of biological processes. Here we set out to investigate whether these genes have a modular organization similar to that of protein-coding genes. Accordingly, we compared the sequence of all the exonic regions of human lncRNAs and identified 106 clusters of non-repetitive exonic modules shared between this class of genes. These modules display evidence of purifying selection, are highly conserved between humans and the four great ape species, and may represent distinct functional units that have been shuffled among multiple lncRNA genes, in a manner similar to the exon-shuffling process that is observed in the coding genome.

evolutionary biology↗