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Norman-Tenazas, R.

Publications and source records attributed to Norman-Tenazas, R..

6 recordsLinked to original sources

Recurrent connections enable point attractor dynamics and dimensionality reduction in a connectome-constrained model of the insect learning center

The learning center in the insect, the mushroom body (MB) with its predominant population of Kenyon Cells (KCs), is a widely studied model system to investigate neural processing principles, both experimentally and theoretically. While many computational models of the MB have been studied, the computational role of recurrent connectivity between KCs remains inadequately understood. Dynamical point attractors are a candidate theoretical framework where recurrent connections in a neural network can enable a discrete set of stable activation patterns. However, given that detailed, full recurrent connectivity patterns in biological neuron populations are mostly unknown, how theoretical models are substantiated by specific networks found in biology has not been clear. Leveraging the recent release of the full synapse-level connectivity of the MB in the fly, we performed a series of analyses and network model simulations to investigate the computational role of the recurrent KC connections, especially their significance in attractor dynamics. Structurally, the recurrent excitation (RE) connections are highly symmetric and balanced with feedforward input. In simulations, RE facilitates dimensionality reduction and allows a small set of self-sustaining point attractor states to emerge. To further quantify the possible range of network properties mediated by RE, we systematically explored the dynamical regimes enabled by changing recurrent connectivity strength. Finally, we establish connections between our findings and potential functional or behavioral implications. Overall, our work provides quantitative insights into the possible functional role of the recurrent excitatory connections in the MB by quantifying the point attractor network dynamics within a full synapse-level connectome-constrained highly recurrent network model. These findings advance our understanding of how biological neural networks may utilize point attractor dynamics. Author summaryPoint attractor neural networks are widely used theoretical models of associative memory, where recurrent connections between neurons enable a discrete set of stable activation patterns that can recover a full pattern based on partial cues. The detailed full recurrent connectivity patterns in biological neuron populations are largely unknown, however, raising questions about the precise correspondence between theoretical point attractor models and neural networks found in biology. Recent breakthroughs have unveiled the synapse-level connectivity of all neurons within the learning center of an insect, including recurrent connections between the primary neuron type--a crucial component with an elusive computational role. In this work, we perform analyses of these recurrent connectivity patterns and simulate neural network models that have these biologically constrained neural network patterns. We find that these recurrent connections are highly symmetric and balanced with input to the memory center. In simulations, we find that these recurrent connections perform dimensionality reduction and enable a small set of point attractor states. We additionally characterize how the strength of these recurrent connections affects network properties and downstream behavioral consequences. Overall, this work advances an understanding of the insect learning center as well as the relationship between theoretical and biological recurrent networks.

neuroscience↗

Informing generative replay for continual learning with long-term memory formation in the fruit fly

Continual learning without catastrophic forgetting is a challenge for artificial systems but it is done naturally across a range of biological systems, including in insects. A recurrent circuit has been identified in the fruit fly mushroom body to consolidate long term memories (LTM), but there is not currently an algorithmic understanding of this LTM formation. We hypothesize that generative replay is occurring to consolidate memories in this recurrent circuit, and find anatomical evidence in synapse-level connectivity that supports this hypothesis. Next, we introduce a computational model which combines an initial experience phase and LTM phase to perform generative replay based continual learning. When evaluated on a CIFAR-100 class-incremental continual learning task, the modeled LTM phase increases classification performance by 20% and approaches within 2% of the performance for a non-incremental upper bound baseline. Unique elements of the proposed generative replay model include: 1) coupling high dimensional sparse activation patterns with generative replay and 2) sampling and reconstructing higher level representations for training generative replay (as opposed to reconstructing sensory-level or processed sensory-level representations). Additionally, we make the experimentally testable prediction that a specific set of synapses would need to undergo experience-dependent plasticity during LTM formation to support our generative replay based model.

neuroscience↗

NeuVue: A Framework and Workflows for High-Throughput Electron Microscopy Connectomics Proofreading

Connectomic reconstruction from large image volumes produces segmentation and synaptic-assignment errors that must be resolved to support downstream analyses. As datasets have grown larger and teams more distributed, proofreading has become a critical operational bottleneck. Workflows for proofreading and error correction have not scaled commensurately with connectomic data production and may not accommodate heterogeneous proofreader expertise and machine-generated candidate edits. New tools are therefore needed to organize, prioritize, and coordinate proofreading at volume scale. Here we present NeuVue, a task-management and prioritization framework that operationalizes proofreading through atomic, auditable tasks for individual and team review, multistage routing across proofreader cohorts, performance and volume-state tracking, and integration with community annotation, visualization, and analysis services. We report the use of NeuVue across two volumetric datasets, supporting scalable proofreading by over forty proofreaders and producing over fifty thousand edits. NeuVue provides a reproducible human-in-the-loop framework for generating, validating, and maintaining large connectomic datasets.

neuroscience↗

Circuit motifs and graph properties of connectome development in C. elegans

Network science is a powerful tool that can be used to better explore the complex structure of brain networks. Leveraging graph and motif analysis tools, we interrogate C. elegans connectomes across multiple developmental time points and compare the resulting graph characteristics and substructures over time. We show the evolution of the networks and highlight stable invariants and patterns as well as those that grow or decay unexpectedly, providing a substrate for additional analysis.

bioinformatics↗

Online learning for orientation estimation during translation in an insect ring attractor network

Insect neural systems are a promising source of inspiration for new algorithms for navigation, especially on low size, weight, and power platforms. There have been unprecedented recent neuroscience breakthroughs with Drosophila in behavioral and neural imaging experiments as well as the mapping of detailed connectivity of neural structures. General mechanisms for learning orientation in the central complex (CX) of Drosophila have been investigated previously; however, it is unclear how these underlying mechanisms extend to cases where there is translation through an environment (beyond only rotation), which is critical for navigation in robotic systems. Here, we develop a CX neural connectivity-constrained model that performs sensor fusion, as well as unsupervised learning of visual features for path integration; we demonstrate the viability of this circuit for use in robotic systems in simulated and physical environments. Furthermore, we propose a theoretical understanding of how distributed online unsupervised network weight modification can be leveraged for learning in a trajectory through an environment by minimizing of orientation estimation error. Overall, our results here may enable a new class of CX-derived low power robotic navigation algorithms and lead to testable predictions to inform future neuroscience experiments. SummaryAn insect neural connectivity-constrained model performs sensor fusion and online learning for orientation estimation.

neuroscience↗

Toward A Reproducible, Scalable Framework for Processing Large Neuroimaging Datasets

Emerging neuroimaging datasets (collected through modalities such as Electron Microscopy, Calcium Imaging, or X-ray Microtomography) describe the location and properties of neurons and their connections at unprecedented scale, promising new ways of understanding the brain. These modern imaging techniques used to interrogate the brain can quickly accumulate gigabytes to petabytes of structural brain imaging data. Unfortunately, many neuroscience laboratories lack the computational expertise or resources to work with datasets of this size: computer vision tools are often not portable or scalable, and there is considerable difficulty in reproducing results or extending methods. We developed an ecosystem of neuroimaging data analysis pipelines that utilize open source algorithms to create standardized modules and end-to-end optimized approaches. As exemplars we apply our tools to estimate synapse-level connectomes from electron microscopy data and cell distributions from X-ray microtomography data. To facilitate scientific discovery, we propose a generalized processing framework, that connects and extends existing open-source projects to provide large-scale data storage, reproducible algorithms, and workflow execution engines. Our accessible methods and pipelines demonstrate that approaches across multiple neuroimaging experiments can be standardized and applied to diverse datasets. The techniques developed are demonstrated on neuroimaging datasets, but may be applied to similar problems in other domains.

neuroscience↗