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Noga, A.

Publications and source records attributed to Noga, A..

3 recordsLinked to original sources

Cryo-electron tomography sheds light on the elastic nature of the Trypanosoma brucei tripartite attachment complex

Trypanosomes only contain a single mitochondrion per cell. Within that singular mitochondrion, the protist carries a single mitochondrial genome that consists of a complex DNA network, the kinetoplast DNA (kDNA). The replicated kDNA is segregated during cell division by the tripartite attachment complex (TAC), a multi-protein bridge that physically links each daughter kDNA to a basal body (BB). BB movements drive kDNA segregation prior to cell division. How the TAC accommodates constant BB movements while maintaining a stable kDNA anchor throughout the cell cycle has remained unclear. Here we used cryo-electron tomography to image the cytoplasmic part of the TAC in its native context. We resolved the BB, the mitochondrial membranes, and the exclusion zone filaments (EZFs) connecting the BB and pro-BB to the outer mitochondrial membrane (OMM) and quantified the geometry of the region across many cells. EZF lengths spanned 230 to 625 nm in zoid cells and up to 874 nm in NP40-treated cells, and the BB occupied a wide range of positions and orientations relative to the OMM, while the pro-BB sat closer and more constrained. Building on these observations and prior evidence that p197 alone defines the BB-OMM distance, we propose that p197 is a length-variable connector: the length of a tandem array of -helical repeats depends on their relative orientation, and filaments of different lengths coexist at one basal body. How that orientation is set remains open, but such a connector reconciles stable kDNA anchoring with the mechanical demands of BB movement during the cell cycle.

cell biology↗

Geometric morphometric analysis reveals cranial shape divergence and asymmetry in extinct and extant species of big cats (Carnivora: Felidae)

Felidae, a family of the order Carnivora, includes extinct and extant species of cats spread across a wide ecological and geographical landscape. Cats are well-suited for predation due to various physical and behavioral characteristics, such as optimized limb length, skull shape, as well as enhanced hearing and vision. Morphological changes across Felidae species, particularly changes in skull shape, are likely explained by differences in predatory and feeding behaviors. Toward that end, cranial shape was analyzed across six different extant and extinct Felidae species using two-dimensional geometric morphometrics. From the lateral cranial view, we discovered that the cheetah (Acinonyx jubatus) and the North American Sabretooth (Smilodon) had the most significant shape divergence, specifically at the frontal bone and post orbital regions of the skull. Specifically, we found that the Sabretooth had a significantly shorter coronoid process compared to other Felids. We also observed a significant difference in post orbital shape in the cheetah dorsal cranium. Interestingly, we found that both the cheetah and the extinct North American Lion demonstrate significant shape asymmetry in the postorbital region from a ventral view of the skull. Shape divergence and asymmetry in select Felid skulls may arise from decreased genetic diversity. Taken together, we reasoned that morphological changes in skull shape likely evolved to support differences in predatory behavior across Felidae.

evolutionary biology↗

ATP induced conformational change of axonemal outer dynein arms studied by cryo-electron tomography

Axonemal dyneins in the outer dynein arm (ODA) generate force for ciliary beating. We analyzed three states of ODA during the power stroke cycle using in situ cryo-electron tomography, subtomogram averaging and classification. These states of force generation depict the pre-power stroke, post-power stroke conformations and an intermediate state. Comparison of these conformations to published in vitro atomic structures of cytoplasmic dynein, ODA and Shulin-ODA complex showed that the orientation and position of the dynein head and linker differs. Our analysis shows that all dynein linkers in the in the absence of ATP interact with AAA3/AAA4, indicating interaction to the adjacent B-tubule direct dynein orientation. For the pre-power stroke conformation, we found changes of the tail anchored on the A-tubule. We built pseudo-atomic models from high-resolution structures to generate a best fitting atomic model to the in-situ pre- and post-power stroke ODA, thereby showing that the Shulin-ODA display similar conformation as the active pre-power stroke ODA conformation in the axoneme.

molecular biology↗