Biology subjects

Nock, V.

Publications and source records attributed to Nock, V..

5 recordsLinked to original sources

bioRxiv2026

Developing permeable polydimethylsiloxane-based biomimetic leaf surfaces to study phyllosphere microbial ecology.

Polydimethylsiloxane (PDMS) is an excellent material for the construction of biomimetic leaf replicas which reproduce leaf surfaces with high fidelity. This allows for the study of leaf surface-colonizing bacteria and the impact of the leaf topology on bacterial distributions and behavior. However, their application is limited to short-term experiments, as long term survival of microorganisms on their surface is not possible due to a lack of nutrient replenishment. On living leaves, nutrients diffuse across the cuticle via leaching, a process not yet replicated in biomimetic systems. Here, we explore whether water and fructose can be supplied to microbial colonizers on PDMS membranes by mimicking leaching. We created hybrid membranes by incorporating polymers (Carbopol, Pemulen, cellulose microfibers, cellulose nanocrystals, and polyvinylpyrrolidone) to enhance nutrient transport. We determined that bulk diffusion of water correlated negatively with membrane thickness and positively with polymer concentration. Further, fructose diffusion across hybrid membranes reached similar rates compared to isolated Populus x canescens leaf cuticles. Under high relative humidity, these membranes supported long-term bacterial survival. Our findings represent important steps towards the development of topomimetic leaf surfaces that sustain microbial life, enabling further investigation into the microbe-microbe interactions that take place on leaves.

microbiology↗

bioRxiv2024

On-chip non-contact mechanical cell stimulation - quantification of SKOV-3 alignment to suspended microstructures

Although the accumulation of random genetic mutations have been traditionally viewed as the main cause of cancer progression, altered mechanobiological profiles of the cells and microenvironment also play a major role as a mutation-independent element. To probe the latter, we have previously reported a microfluidic cell-culture platform with an integrated flexible actuator and its application for sequential cyclic compression of cancer cells. The platform is composed of a control microchannel in a top layer for introducing external pressure, and a polydimethylsiloxane (PDMS) membrane from which a monolithically-integrated actuator protrudes downwards into a cell-culture microchannel. When actively actuated, the integrated actuator, referred to as micro-piston, transfers the pressure from the control channel as a mechanical force to the cells underneath. When not actuated, the micro-piston remains suspended above cells, separated from the latter via a liquid-filled gap of [~]108 {micro}m. Despite the lack of direct physical contact between the micro-piston and cells in the latter arrangement, we observed distinct alignment of SKOV-3 ovarian cancer cells to the piston shape. To characterize this observation, micro-piston localization, shape, and size were adjusted and the directionality of a mono-layer of SKOV-3 cells relative to the suspended structure was probed. Cell alignment analysis was performed in a novel, label-free approach by measuring elongation angles of whole cell bodies with respect to micro-piston peripheries. Alignment of SKOV-3 cells to the structure outline was significant for circular, triangular and square micro-piston when compared to control areas without micro-piston on the same chip. The effect was present irrespective of whether cells were loaded with micro-pistons in static position ([~]108 {micro}m gap) or actively retracted using vacuum (>108 {micro}m gap). Similar alignment was not observed for MCF7 cancer cells and MCF10A non-cancerous epithelial cells. The reported observation of directional movement and growth of SKOV-3 cells towards the region under micro-pistons point towards a to-date unexplored mechanotactic behaviour of these cells, warranting future investigations regarding the mechanisms involved and the role these may play in cancer.

cell biology↗

bioRxiv2022

Application of sequential cyclic compression on cancer cells in a flexible microdevice

Mechanical forces shape physiological structure and function within cell and tissue microenvironments, during which cells strive to restore their shape or develop an adaptive mechanism to maintain cell integrity depending on strength and type of the mechanical loading. While some cells are shown to experience permanent plastic deformation after a repetitive mechanical tensile loading and unloading, the impact of such repetitive compression on plastic deformation of cells is yet to be understood. As such, the ability to apply cyclic compression is crucial for any experimental setup aimed at the study of mechanical compression taking place in cell and tissue microenvironments. Here, we demonstrate such cyclic compression using a microfluidic compression platform on live cell actin in SKOV-3 ovarian cancer cells. Live imaging of the actin cytoskeleton dynamics of the compressed cells was performed for varying pressures applied sequentially in ascending order during cell compression. Additionally, recovery of the compressed cells was investigated by capturing actin cytoskeleton and nuclei profiles of the cells at zero time and 24 h-recovery after compression in end point assays. This was performed for a range of mild pressures within the physiological range. Results showed that the phenotypical response of compressed cells during recovery after compression with 20.8 kPa differed observably from that for 15.6 kPa. This demonstrated the ability of the platform to aid in the capture of minute differences in cell behaviour as a result of being compressed at various pressures in physiologically relevant manner. Differences observed between compressed cells fixed at zero time or after 24 h-recovery suggest that SKOV-3 cells exhibit deformations at the time of the compression, a proposed mechanism cells use to prevent mechanical damage. The extent of recovery of compressed cells, inferred by imaging cell membrane bulges and actin cytoskeleton and measuring the shape descriptors of cell nuclei, can give insights into the plasticity of cancer cells. Thus, biomechanical responses of SKOV-3 ovarian cancer cells to sequential cyclic compression and during recovery after compression could be revealed in a flexible microdevice. As demonstrated in this work, the microfluidic platform could control the strength and duration of cyclic compression, while enabling the observation of morphological, cytoskeletal and nuclear changes and recovery in compressed cells, thus providing a powerful new tool for the study of mechanobiological processes in cancer and cell biology.

bioengineering↗

bioRxiv2021

A flexible micro-piston device for mechanical cell stimulation and compression in microfluidic settings

Evidence continues to emerge that cancer is not only a disease of genetic mutations, but also of altered mechanobiological profiles of the cells and microenvironment. This mutation-independent element might be a key factor in promoting development and spread of cancer. Biomechanical forces regulate tumor microenvironment by solid stress, matrix mechanics, interstitial pressure and flow. Compressive stress by tumor growth and stromal tissue alters the cell deformation, and recapitulates the biophysical properties of cells to grow, differentiate, spread or invade. Such a solid stress can be introduced externally to change the cell response and to mechanically induce cell lysis by dynamic compression. In this work we report a microfluidic cell-culture platform with an integrated, actively-modulated actuator for the application of compressive forces on cancer cells. Our platform is composed of a control microchannel in a top layer for introducing external force and a polydimethylsiloxane (PDMS) membrane with monolithically integrated actuators. The integrated actuator, herein called micro-piston, was used to apply compression on SKOV-3 ovarian cancer cells in a dynamic and controlled manner by modulating applied gas pressure, localization, shape and size of the micro-piston. We report fabrication of the platform, characterization of the mechanical actuator experimentally and computationally, as well as cell loading and culture in the device. We further show use of the actuator to perform both, repeated dynamic cell compression at physiological pressure levels, and end-point mechanical cell lysis, demonstrating suitability for mechanical stimulation to study the role of compressive forces in cancer microenvironments.

bioengineering↗

bioRxiv2019

Replicating Arabidopsis Model Leaf Surfaces for Phyllosphere Microbiology

Artificial surfaces are commonly used in place of leaves in phyllosphere microbiology to study microbial behaviour on plant leaf surfaces. Studies looking into individual environmental factors influencing microorganisms are routinely carried out using artificial surfaces. Commonly used artificial surfaces include nutrient agar, isolated leaf cuticles, and reconstituted leaf waxes. However, interest is growing in using microstructured surfaces mimicking the complex topography of leaf surfaces for phyllosphere microbiology. As such replica leaf surfaces, produced by microfabrication, are appearing in literature. Replica leaf surfaces have been produced in agar, epoxy, polystyrene, and polydimethylsiloxane (PDMS). However, these protocols are not suitable for replicating fragile leaves such as of the model plant Arabidopsis thaliana. This is of importance as A. thaliana is a model system for molecular plant genetics, molecular plant biology, and microbial ecology. Here we present a versatile replication protocol for replicating fragile leaf surfaces into PDMS. We display the capacity of our replication process using optical microscopy, atomic force microscopy (AFM), and contact angle measurements to compare living and PDMS replica A. thaliana leaf surfaces. To highlight the use of our replica leaf surfaces for phyllosphere microbiology, we visualised bacteria on the replica leaf surfaces in comparison to living leaf surfaces.

microbiology↗