bioRxiv Science⌕ Search

Biology subjects

Nikitin, M. P.

Publications and source records attributed to Nikitin, M. P..

3 recordsLinked to original sources

Development of approaches to overcome the drop in hematocrit when implementing mononuclear phagocyte system cytoblockade in vivo used to prolong the circulation of nanoparticles in the blood

While engineered nanomaterials offer unprecedented precision in targeting tumor cells, their efficacy is often limited by rapid clearance from the bloodstream via the mononuclear phagocyte system (MPS). To overcome this limitation, a promising strategy known as MPS-cytoblockade has been developed. This approach involves administering antibodies against host erythrocytes. The resulting saturation of the MPS with erythrocyte clearance creates a critical window, allowing subsequently administered nanoparticles to evade immune surveillance and circulate for a significantly extended period. However, MPS-cytoblockade induces a transient reduction in hematocrit, which can lead to adverse effects. Here, we demonstrate that approaches to restore hematocrit, specifically through the administration of donor erythrocyte suspension or the hormone erythropoietin, effectively prevent this drop while maintaining the efficacy of the MPS-cytoblockade. Notably, these interventions do not compromise the prolonged circulation time of the nanoparticles or alter their biodistribution, preserving high accumulation in tumors. Our findings establish a viable strategy to mitigate a key side effect of MPS-cytoblockade, thereby enhancing its therapeutic potential and safety profile.

pharmacology and toxicology↗

Topology of molecular networks offers signaling insusceptibility to temperature and ionic strength changes

The equilibrium constants of chemical reactions fundamentally depend on temperature, posing challenges for living systems. However, many conformer organisms do not maintain stable internal temperature. This raises the question: can molecular signaling pathways inherently resist temperature susceptibility? Molecular commutation is a recently discovered, fundamentally distinct mechanism for biological information processing and storage that underlies highly complex signal processing and computation using only molecular interactions governed by the law of mass action. Here we show that molecular commutation enables biological information processing networks to become temperature independent through compensatory reactions (i.e., network topology). Using complex logic gates, receptor-activator networks, and signaling systems with non-linear, non-monotonic functions (e.g., x2, x3), we show that topological compensation preserves signaling function across temperatures up to 0.1-50 {degrees}C, despite dissociation constant changes of up to nine orders of magnitude. This mechanism also stabilizes systems against dramatic ionic strength shifts (e.g., Na+ from 0.1-1 M). Thus, topological compensation is a unique homeostasis mechanism that may be used by delicate biological systems of arbitrarily high complexity. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=199 SRC="FIGDIR/small/680621v1_ufig1.gif" ALT="Figure 1"> View larger version (60K): org.highwire.dtl.DTLVardef@1a28a7forg.highwire.dtl.DTLVardef@32b35borg.highwire.dtl.DTLVardef@9d3d51org.highwire.dtl.DTLVardef@1249855_HPS_FORMAT_FIGEXP M_FIG C_FIG

molecular biology↗

Unlocking DNA Damage Sensitivity of Cancer Cells: The Potential of Splicing Inhibitors

Despite the growing interest in pre-mRNA alternative splicing (AS) as a therapeutic anticancer target, the potential of splicing inhibitors in treating solid tumors remains largely unexplored. We conducted a meta-analysis of transcriptome data from six different tumor types and revealed that splicing inhibitors induced similar patterns of AS, resulting in widespread exon-skipping and intron retention events that often lead to nonsense-mediated decay of the transcripts. Interestingly, in many cases exon skipping is induced by a compensatory cellular response to splicing inhibitor treatment. It involves an upregulation of multiple splicing factors and incomplete recognition of branch points by U2 snRNP. These post transcriptional changes downregulate one-third of essential DNA repair genes, thereby creating a therapeutic vulnerability that can be exploited for cancer treatment. To harness this vulnerability, we proposed a new approach to cancer treatment consisting of sequential addition of a splicing inhibitors followed by a DNA-damaging agent. Our in vitro and in vivo experiments demonstrated that this strategy exhibits promising therapeutic potential for a wide range of tumors.

cancer biology↗