Biology subjects

Niinemets, U.

Publications and source records attributed to Niinemets, U..

11 recordsLinked to original sources

bioRxiv2026

Improved model representation of the photosynthetic light reactions reduces estimates of global gross primary productivity

The assimilation of carbon dioxide by plants can be predicted by the Farquhar, von Caemmerer and Berry model of photosynthesis. This largely mechanistic model is central to understanding how plants influence Earths climate. However, it represents the use of light by photosynthesis using an empirical formulation. Johnson and Berry proposed an alternative mechanistic formulation based on the functioning of the cytochrome b6f complex that includes key steps in light harvesting and electron transport. We compared both formulations using photosynthetic light response measurements from 146 C3 species spanning arctic to tropical biomes and implemented them in the terrestrial biosphere model ELM-FATES to simulate global photosynthesis. The Johnson and Berry formulation better fitted the measured response of leaf-level photosynthesis to light, and predicted lower photosynthetic rates at intermediate light levels, which decreased global estimations of terrestrial photosynthesis by 8%. Our findings support adopting the Johnson and Berry formulation to improve model representation of global carbon cycle modeling.

plant biology↗

bioRxiv2024

Land-use impacts on plant functional diversity throughout Europe

AimGlobal biodiversity loss resulting from anthropogenic land-use activities is a pressing concern, requiring precise assessments of impacts at large spatial extents. Existing models mainly focus on species richness and abundance, lacking insights into ecological mechanisms and species roles in ecosystem functioning. To bridge this gap, we conducted an extensive analysis of the impact of human land use on vascular plant functional diversity, across diverse land-use classes and bioregions in Europe, comparing it to traditional metrics. Location: Europe Time period: 1992-2019 Major taxa studied: Vascular plants MethodsIntegrating extensive databases of vegetation plots with spatial data on land use and land cover, we paired plots from areas actively used and modified by humans with plots from natural habitats under similar environmental conditions. Using species occurrences and traits, in each plot we computed three complementary functional diversity metrics (functional richness, evenness, and divergence), species richness and abundance. We assessed the impact of land use by comparing the metrics in the paired plots. ResultsOur findings revealed that, compared to natural habitats, anthropogenic land use exhibits lower functional richness and divergence but higher functional evenness across most land-use classes and bioregions. The response of functional richness was more marked than the other two metrics and especially pronounced in croplands and urban areas and in northern bioregions. Functional richness exhibited a pattern that did not fully overlap with the trend in species richness, providing useful complementary information. Main conclusionsWe provide a large-scale precise assessment of anthropogenic land-use impacts on functional diversity across Europe. Our findings indicate that: (i) human disturbance significantly alters plant functional diversity compared to natural habitats; (ii) this alteration goes in the direction of functional homogenization; (i) functional diversity metrics complement traditional metrics by offering deeper insights into the ecological mechanisms in response to anthropogenic land use.

ecology↗

bioRxiv2023

Species-specific stomatal ABA responses in juvenile ferns grown from spores

Adjustable stomatal pores in leaves control the balance between CO2 entry for photosynthesis and water loss via transpiration. The drought and low humidity-induced phytohormone abscisic acid (ABA) is the major regulator of active stomatal closure responses in angiosperms. Whether the ABA signalling pathway for stomatal closure functions similarly in older land plant groups, such as lycophytes and ferns, is still unclear: some studies find no stomatal ABA response in ferns, others find that ABA response is present or triggered by specific environmental conditions. Here we analysed steady-state gas-exchange, stomatal density and stomatal response to exogenously applied ABA in nine fern species grown from spores under controlled growth conditions. We find that ABA responses in ferns are species-specific: stomata in four out of nine species closed in response to ABA. The ABA-sensitive species mostly had slow responses of low magnitude, suggesting reduced ABA-sensitivity of ABA signalling pathway in ferns. Species with larger stomatal conductance tended to close stomata in response to ABA, whereas a relatively strong response of ~35% was also found in Cyrtomium falcatum, a fern with low stomatal conductance. Our results show that ferns constitute a diverse group with varying degree of stomatal ABA-sensitivity. Further characterisation of ABA signalling pathway components in diverse fern species is needed to understand the genetic basis for the variable ABA-sensitivity in ferns.

plant biology↗

bioRxiv2023

Habitat amount, temperature and biotic interactions drive community structure, life-history traits, and performance traits of cavity-nesting bees and wasps and their natural enemies in cities

O_LIUrban ecosystems are associated with socio-ecological conditions that can filter and promote taxa. However, the strength of the effect of ecological filtering on biodiversity could vary among biotic and abiotic factors. Here, we investigate the effects of habitat amount, temperature, and host-enemy biotic interactions in shaping communities of cavity-nesting bees and wasps (CNBW) and their natural enemies. C_LIO_LIWe installed trap-nests in 80 sites distributed along urban intensity gradients in 5 European cities (Antwerp, Paris, Poznan, Tartu and Zurich). We quantified the species richness and abundance of CNBW hosts and their natural enemies, as well as two performance traits (survival and parasitism) and two life-history traits (sex ratio and number of offspring per nest for the hosts). We analysed the importance of the abiotic and biotic variables using generalized linear models and multi-model inference. C_LIO_LIWe found that habitat amount and temperature were the main drivers of CNBW host responses, with larger habitat amounts resulting in higher species richness and abundance, and a larger total number of brood cells per nest for both bees and wasps, as well as a larger probability of survival for bees. Conversely, higher local temperatures decreased species richness, abundance, survival rate, number of brood cells per nest, and proportion of females in CNBW hosts. C_LIO_LIBiotic interactions with natural enemies shaped wasp species richness, with higher levels of parasitism resulting in more wasp species. Similarly, our results showed direct density-dependence between CNBW hosts and their natural enemies. C_LIO_LIOverall, our study highlights the importance of habitat amount and temperature in shaping urban food webs, through direct effects on hosts responses and the subsequent consequences for their natural enemies. As cities prepare to tackle the future consequences of global change, strategies that make it possible to maintain available habitat and mitigate urban overheating emerge as a key urban adaptation for biodiversity conservation. C_LI

ecology↗

bioRxiv2021

Global trade-offs in tree functional traits

AO_SCPLOWBSTRACTC_SCPLOWDue to massive energetic investments in woody support structures, trees are subject to unique physiological, mechanical, and ecological pressures not experienced by herbaceous plants. When considering trait relationships across the entire plant kingdom, plant trait frameworks typically must omit traits unique to large woody species, thereby limiting our understanding of how these distinct ecological pressures shape trait relationships in trees. Here, by considering 18 functional traits--reflecting leaf economics, wood structure, tree size, reproduction, and below-ground allocation--we quantify the major axes of variation governing trait expression of trees worldwide. We show that trait variation within and across angiosperms and gymnosperms is captured by two independent processes: one reflecting tree size and competition for light, the other reflecting leaf photosynthetic capacity and nutrient economies. By exploring multidimensional relationships across clusters of traits, we further identify a representative set of seven traits which captures the majority of variation in form and function in trees: maximum tree height, stem conduit diameter, specific leaf area, seed mass, bark thickness, root depth, and wood density. Collectively, this work informs future trait-based research into the functional biogeography of trees, and contributes to our fundamental understanding of the ecological and evolutionary controls on forest biodiversity and productivity worldwide.

ecology↗

bioRxiv2020

Quaternary climate change explains global patterns of tree beta-diversity

Both historical and contemporary environmental conditions determine present biodiversity patterns, but their relative importance is not well understood. One way to disentangle their relative effects is to assess how different dimensions of beta-diversity relate to past climatic changes, i.e., taxonomic, phylogenetic and functional compositional dissimilarity, and their components generated by replacement of species, lineages and traits (turnover) and richness changes (nestedness). Here, we quantify global patterns of each of these aspects of beta-diversity among neighboring sites for angiosperm trees using the most extensive global database of tree species-distributions (43,635 species). We found that temperature change since the Last Glacial Maximum (LGM) was the major influence on both turnover and nestedness components of beta-diversity, with a negative correlation to turnover and a positive correlation to nestedness. Moreover, phylogenetic and functional nestedness was higher than expected from taxonomic beta-diversity in regions that experienced large temperature changes since the LGM. This pattern reflects relatively greater losses of phylogenetic and functional diversity in species-poor assemblages, possibly caused by phylogenetically and functionally selective species extinction and recolonization during glacial-interglacial oscillations. Our results send a strong warning that rapid anthropogenic climate change is likely to result in a long-lasting phylogenetic and functional compositional simplification, potentially impairing forest ecosystem functioning.

ecology↗

bioRxiv2020

How many and which species to plant? A multi-trait-based approach to select species to restore ecosystem services

It has been increasingly argued that ecological restoration should focus more on targeting ecosystem services than on species composition of reference ecosystems. In this sense, the role that species play on community assembly and functioning through their functional traits is very relevant, because effect traits mediate ecosystem processes, ultimately resulting in provision of ecosystem services. One major challenge in ecological restoration is to know which species to use that will deliver the target ecosystem services. We developed an algorithm to select the minimum set of species that maximize the functional richness (FRic) and the functional redundancy (FR) of the restored community, a proxy for the provision of multiple ecosystem services and the resilience of the system to environmental changes, respectively. For this, we simulated the restoration of 24 riparian woody communities of the Brazilian Cerrado. Using the species pool of each original local community, we ran restoration simulations for gradually increasing species richness until reaching the total species richness of the original local community. We computed FRic and FR for each simulated restoration community using the traits specific leaf area, maximum plant height and seed mass. Our simulation results indicate that multiple ecosystem services could be restored with an average of 66% of the species of the original community. Moreover, an average of 59% of the species would be needed to restore communities resilient to environmental changes. Our approach contributes to solving one of the major challenges of ecological restoration, which is defining how many and which species should be used to achieve functional targets. We believe this approach can help in projects of restoration by enabling restoration practitioners to select minimum alternative sets of species that optimize the provision of multiple ecosystem services in a resilient restored ecosystem.

ecology↗

bioRxiv2020

Minding The Gap: Range Size And Economic Use Drive Functional Trait Data Shortfall In The Atlantic Forest

Biodiversity shortfalls are knowledge gaps that may result from uneven sampling through time and space and human interest biases. Gaps in data of functional traits of species may add uncertainty in functional diversity and structure measures and hinder inference on ecosystem functioning and ecosystem services, with negative implications for conservation and restoration practices, such as in Atlantic Forest hotspot. Here we investigate which are the potential drivers of trait data gaps and where geographically they are in the Atlantic Forest. We quantified trait gaps for four key plant functional traits of 2335 trees species, and evaluated which factors drive trait gap at the species and at the geographical level. At the species level, we found larger trait gaps for small-ranged and with no economic use. At the geographical level, we found larger gaps at the Atlantic Forest east coast. Trait gaps were higher away from urban areas, and among species with smaller mean range size and smaller mean economic use of wood, and smaller near protected areas. Efforts on reducing trait gaps of small-ranged and of species with economic use of wood can further advance theory-driven studies and improve knowledge coverage

ecology↗

bioRxiv2020

A meta-analysis of mesophyll conductance to CO2 in relation to major abiotic stresses in poplar species

Mesophyll conductance (gm) determines the diffusion of CO2 from the substomatal cavities to the site of carboxylation in the chloroplasts and represents a critical limiting factor to photosynthesis. In this study, we evaluated the average effect sizes of different environmental constraints on gm in Populus spp., a forest tree model. We collected raw data of 815 A-Ci response curves from 26 datasets to estimate gm, using a single curve-fitting method to alleviate method-related bias. We performed a meta-analysis to assess the effects of different abiotic stresses on gm. We found a significant increase in gm from the bottom to the top of the canopy that was concomitant with the increase of maximum rate of carboxylation and light-saturated photosynthetic rate (Amax). gm was positively associated with increases in soil moisture and nutrient availability, but insensitive to increasing soil copper concentration, and did not vary with atmospheric CO2 concentration. Our results showed that gm was strongly related to Amax and to a lesser extent to stomatal conductance (gs). Also, a negative linear relation was obtained between gm and specific leaf area, which may be used to scale-up gm within the canopy.

plant biology↗

bioRxiv2020

Half of the world's tree biodiversity is unprotected and is increasingly threatened by human activities

Although trees are key to ecosystem functioning, many forests and tree species across the globe face strong threats. Preserving areas of high biodiversity is a core priority for conservation; however, different dimensions of biodiversity and varied conservation targets make it difficult to respond effectively to this challenge. Here, we (i) identify priority areas for global tree conservation using comprehensive coverage of tree diversity based on taxonomy, phylogeny, and functional traits; and (ii) compare these findings to existing protected areas and global biodiversity conservation frameworks. We find that ca. 51% of the top-priority areas for tree biodiversity are located in current protected areas. The remaining half top-priority areas are subject to moderate to high human pressures, indicating conservation actions are needed to mitigate these human impacts. Our findings emphasize the effectiveness of using tree conservation priority areas for future global conservation planning.

ecology↗

bioRxiv2018

Does the leaf economic spectrum hold within plant functional types? A Bayesian multivariate trait meta-analysis

We investigated whether global leaf economic relationships are also present within plant functional types (PFTs), and the extent to which this hierarchical structure can be used to constrain trait estimates. We developed a hierarchical multivariate Bayesian model that assumes separate means and covariance structures within and across PFTs and fit this model to seven leaf traits from the TRY database related to leaf morphology, biochemistry, and photosynthetic metabolism. Trait correlations were generally consistent in direction within and across PFTs, and consistent with predictions of the leaf economic spectrum. However, correlation strength varied substantially across PFTs indicating that leaf economic relationships within PFTs are often confounded by the unique physiology of certain plant types or environmental conditions in certain biomes. Leveraging covariance in multivariate models reduced uncertainties in mean trait estimates, particularly for undersampled trait-PFT combinations. However, additional constraint from the across-PFT hierarchy was limited.\n\nData accessibilityThe R code and ancillary data for running these analyses is publicly available online via the Open Science Framework at https://osf.io/w8y73/. The TRY data request used for this analysis has been archived at http://try-db.org, and can be retrieved by providing the TRY data request ID (#1584). Alternatively, the exact preformatted data used in this analysis are available on request to Alexey Shiklomanov (alexey.shiklomanov@pnnl.gov).

ecology↗