Biology subjects

Niemeyer, B. A.

Publications and source records attributed to Niemeyer, B. A..

6 recordsLinked to original sources

bioRxiv2023

Simultaneous detection of membrane contact dynamics and associated Ca2+ signals by reversible chemogenetic reporters

Membrane contact sites (MCSs) are hubs allowing various cell organelles to coordinate their activities. The dynamic nature of these sites and their small size hinder analysis by current imaging techniques. To overcome these limitations, we here designed a series of reversible chemogenetic reporters incorporating improved, low-affinity variants of splitFAST, and studied the dynamics of different MCSs at high spatiotemporal resolution, both in vitro and in vivo. We demonstrated that these versatile reporters suit different experimental setups well, allowing one to address challenging biological questions. Using these novel probes, we identified a hitherto unknown pathway, in which calcium (Ca2+) signalling dynamically regulates endoplasmic reticulum-mitochondria juxtaposition, characterizing the underlying mechanism. Finally, by integrating Ca2+-sensing capabilities into the splitFAST technology, we introduced PRINCESS (PRobe for INterorganelle Ca2+-Exchange Sites based on SplitFAST), an unprecedented class of reporters to simultaneously detect MCSs and measure the associated Ca2+ dynamics using a single biosensor.

cell biology↗

bioRxiv2023

A better brain? Alternative spliced STIM2 in hominoids arises with synapse formation and creates a gain-of-function variant

Balanced Ca2+ homeostasis is essential for cellular functions. STIM2 mediated Store-Operated Ca2+ Entry (SOCE) regulates cytosolic and ER Ca2+ concentrations, stabilizes dendritic spine formation and drives presynaptic spontaneous transmission and ER stress in neurons. Recently identified alternative spliced variants expand the STIM protein repertoire, uncover unique functions and facilitate our understanding of tissue specific regulation of SOCE. Here, we describe an addition to this repertoire, a unique short STIM2 variant (STIM2.3/STIM2G) present only in old world monkeys and humans with expression in humans starting with the beginning of brainwave activity and upon synapse formation within the cerebral cortex. In contrast to the short STIM1B variant, STIM2.3/STIM2G increases SOCE upon stimulation independently of specific spliced in residues. Basal cluster formation is reduced and analyses of several additional deletion and point mutations delineate the role of functional motifs for Ca2+ entry, NFAT activation and changes in neuronal gene expression. In addition, STIM2.3/STIM2G shows reduced binding and activation of the energy sensor AMPK. In the context of reduced STIM2.3 splicing seen in postmortem brains of patients with Huntingtons disease, our data suggests that STIM2.3/STIM2G is an important regulator of neuronal Ca2+ homeostasis, potentially involved in synapse formation/maintenance and evolutionary expansion of brain complexity.

cell biology↗

bioRxiv2021

Plasma Membrane Calcium ATPase (PMCA) Regulates Stoichiometry of CD4+ T-cell Compartments

Immune responses involve mobilization of T cells within naive and memory compartments. Tightly regulated Ca2+ levels are essential for balanced immune outcomes. How Ca2+ contributes to regulating compartment stoichiometry is unknown. Here, we show that plasma membrane Ca2+ ATPase 4 (PMCA4) is differentially expressed in human CD4+ T compartments yielding distinct store operated Ca2+ entry (SOCE) profiles. Modulation of PMCA4 yielded a more prominent increase of SOCE in memory than in naive CD4+ T cell. Interestingly, downregulation of PMCA4 reduced the effector compartment fraction and led to accumulation of cells in the naive compartment. In silico analysis and chromatin immunoprecipitation unraveled Ying Yang 1 (YY1) as a transcription factor regulating PMCA4 expression. Analyses of PMCA and YY1 expression patterns following activation and of PMCA promoter activity following downregulation of YY1 highlight repressive role of YY1 on PMCA expression. Our findings show that under the transcriptional control by YY1, PMCA4 adapts Ca2+ levels to cellular requirements during effector and quiescent phases and thereby represent a potential target to intervene with the outcome of the immune response.

immunology↗

bioRxiv2020

Alternative splicing switches STIM1 targeting to specialized membrane contact sites and modifies SOCE

Alternative splicing is a potent modifier of protein function. Stromal interaction molecule 1 (Stim1) is the essential activator molecule of store-operated Ca2+ entry (SOCE) and a sorting regulator of certain ER proteins such as Stimulator of interferon genes (STING). Here, we characterize a conserved new variant, Stim1A, where splice-insertion translates into an additional C-terminal domain. We find prominent expression of exonA mRNA in testes, astrocytes, kidney and heart and confirm Stim1A protein in Western blot of testes. In situ, endogenous Stim1 with domain A, but not Stim1 without domain A localizes to unique adhesion junctions and to specialized membrane retrieval sites (tubulobulbar complexes) in testes. Functionally, using Ca2+ imaging and patch-clamp analysis, Stim1A shows a dominant-negative effect on SOCE and ICRAC, despite normal clustering and interaction with Orai1 investigated by combined TIRF and FRET analyses and as confirmed by an increased SOCE upon knock-down of endogenous Stim1A in astrocytes. Mutational analyses in conjunction with imaging and patch-clamp analyses of residues either in domain A or within the N-terminal region of Orai1 demonstrate a specific defect in stabilized channel gating. Our findings demonstrate that cell-type specific splicing of STIM1 adds both an intracellular targeting switch and adapts SOCE to meet the Ca2+ requirements of specific subcellular contact sites.

molecular biology↗

bioRxiv2020

ORAI1 channels form supra-molecular clusters at rest and agglomerate into distinct plasma membrane areas of oval and strand-like shapes after activation

The Ca2+ selective channel ORAI1 and endoplasmic reticulum (ER)-resident STIM proteins form the core of the channel complex mediating store operated Ca2+ entry (SOCE). Using liquid phase electron microscopy (LPEM) the distribution of ORAI1 proteins was examined at rest and after SOCE-activation at nanoscale resolution. The analysis of over seven hundred thousand of ORAI1 positions showed that already at rest, a majority of the ORAI1 channels formed STIM-independent distinct supra-molecular clusters. Upon SOCE activation and in the presence of STIM proteins, ORAI1 assembled in micron-sized two-dimensional (2D) structures, such as the known punctae at the ER plasma membrane contact zones, but also in divergent structures such as strands, and ring-like shapes. Our results thus question the hypothesis that stochastically migrating single ORAI1 channels are trapped at regions containing activated STIM, and we propose instead that supra-molecular ORAI1 clusters fulfill an amplifying function for creating dense ORAI1 accumulations upon SOCE-activation. STATEMENT OF SIGNIFICANCEORAI1 proteins form channels mediating store operated Ca2+ entry, an important trigger for many cellular functions, especially in the immune system. ORAI1 channels at rest are assumed to be randomly distributed in the plasma membrane, while they accumulate into so-called "punctae" upon activation, where binding by STIM proteins activate the Ca2+ channels. Using liquid phase electron microscopy, we discovered that ORAI1 forms small, elongated clusters indicating the existence of supramolecular assemblies. The role of such supramolecular organization of ORAI1 is possibly an amplifying function for the effective creation of ORAI1 accumulations in punctae, since the binding of only one ORAI1 protein would trap a multiple of channels.

biophysics↗

bioRxiv2018

Understanding the regulation of STIM1-ORAI1 interaction using a reaction-diffusion model

Release of Ca2+ from endoplasmatic retriculum (ER) Ca2+ stores causes stromal interaction molecules (STIM) in the ER membrane and ORAI proteins in the plasma membrane (PM) to interact and form the Ca2+ release activated Ca2+ (CRAC) channels, which represent a major Ca2+ entry route in non-excitable cells and thus control various cell functions. Extracellular reactive oxygen species (ROS) can modulate the CRAC current Icrac via oxidation of ORAI1. We formulate a reaction-diffusion model to quantify the STIM1-ORAI1 interaction during CRAC channel formation and analyze different ORAI1 channel stoichiometries and different ratios of STIM1 and ORAI1 in comparison with experimental data. We incorporate the inhibition of ORAI1 channels by ROS into our model and calculate its contribution to the CRAC channel amplitude. We find that the possibility of reactions between CRAC channel subunits and established CRAC channels tunes the total amount of Ca2+ influx and determines which CRAC channel configuration is mostly preferred. High numbers of ROS-inhibited ORAI1 dimers (in comparison to non-inhibited ORAI1 dimers) are needed to induce a strong decrease of Ca2+ influx compared to the wildetype (WT) case.

biophysics↗