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Nezis, I. P.

Publications and source records attributed to Nezis, I. P..

2 recordsLinked to original sources

Msp300 Links Autophagy to Nuclear Morphodynamics

Autophagy is a fundamental cellular process that maintains homeostasis and enables adaptation to stress by degrading damaged or superfluous components. While its core machinery is well characterized, the interplay between autophagy and nuclear architecture remains poorly understood. In this study, we identify the LINC complex protein Msp300 as a novel interactor of the autophagy protein Atg8a in Drosophila melanogaster. Msp300 belongs to the KASH (Klarsicht/ANC-1/Syne Homology) domain protein family, known for its role in nuclear positioning through interactions with the cytoskeleton. The KASH domain anchors Msp300 in the outer nuclear membrane, where it pairs with SUN domain proteins across the nuclear envelope to form the LINC complex, a mechanical bridge between the nucleoskeleton and cytoskeleton. Yeast two-hybrid screening revealed an interaction between Atg8a and Msp300 isoforms E and G, mediated by a canonical LC3-interacting region (LIR). Localization studies show Msp300 associates with Atg8a within the cytoplasm and at the nuclear periphery under both basal and elevated autophagy conditions. Functional perturbations through stress assays indicate that this interaction influences event in and around nucleus, establishing a link between autophagy and nuclear architecture. By exploring the role of Msp300 isoforms E and G in shaping not only nuclear organization but potentially endoplasmic reticulum, through autophagy machinery, this study introduces a new dimension to nuclear envelope biology and opens opportunities to explore how steady state homeostasis, stress adaptation and cytoskeletal connectivity are coordinated at the nuclear periphery.

cell biology↗

LIRcentral: a manually curated online database of experimentally validated functional LIR-motifs

Several selective macroautophagy receptor and adaptor proteins bind members of the Autophagy-related protein 8 (Atg8) family using short linear motifs (SLiMs), most often referred to as Atg8-interacting motifs (AIM) or LC3-interacting motifs (LIR). AIM/LIR-motifs have been extensively studied during the last fifteen years, since they can uncover the underlying biological mechanisms and possible substrates for this key catabolic process of eukaryotic cells. Prompted by the fact that experimental information regarding LIR-motifs can be found scattered across heterogeneous literature resources, we have developed LIRcentral (https://lircentral.eu), a freely available online repository for user-friendly access to comprehensive, high-quality information regarding LIR-motifs from manually curated publications. Herein, we describe the development of LIRcentral and showcase currently available data and features, along with our plans for the expansion of this resource. Information incorporated in LIRcentral is useful for accomplishing a variety of research tasks, including: (i) guiding wet biology researchers for the characterization of novel instances of LIR-motifs, (ii) giving bioinformaticians/computational biologists access to high-quality LIR-motifs for building novel prediction methods for LIR-motifs and LIR containing proteins (LIRCPs) and (iii) performing analyses to better understand the biological importance/features of functional LIR-motifs. We welcome feedback on the LIRcentral content and functionality by all interested researchers and anticipate this work to spearhead a community effort for sustaining this resource which will further promote progress in studying LIR-motifs/LIRCPs.

bioinformatics↗