bioRxiv Science⌕ Search

Biology subjects

Nedbal, J.

Publications and source records attributed to Nedbal, J..

2 recordsLinked to original sources

A novel dual-excitation pulse-amplitude-modulation fluorometer for investigating photosynthesis of plants

A modular instrument was developed to measure the fluorescence yield in plants subject to a combination of two harmonically-oscillating blue lights with independently controlled frequencies and phases.It uses the pulse-amplitude-modulation (PAM) method to measure the fluorescence yield independently of the plant irradiance. Compared to existing commercial instruments, it uses a higher measuring frequency ({approx} 60 kHz) and higher measuring flash irradiance. This enables averaging over a number of subsequent measurement data points to achieve a higher signal-to-noise ratio. The manuscript describes the design, testing, and characterization of the operational limits of the instrument. It identifies its current weaknesses and makes recommendations for improvements. It is accompanied by supplementary materials containing the electronic schematics and the source code. The instrument was used to study a plant response to a mixture of two oscillating lights. It resulted in an excellent signal-to-noise ratio of the measured fluorescent yield. The measurements clearly demonstrated that the fluorescence yield of a plant subject to a combination of two harmonically-oscillating lights is not the same as the sum of the responses to the two oscillating lights applied independently. The observed non-linearity leads to the important conclusion that the time- and frequency-domain cannot be connected by a Fourier transform. Therefore, the frequency-domain approach will yield novel information that is not redundant to the well-established time-domain measurements.

plant biology↗

Bottom-Illuminated Orbital Shaker for Microalgae Cultivation

A bottom-illuminated orbital shaker designed for the cultivation of microalgae suspensions is described in this open-source hardware report. The instrument agitates and illuminates microalgae suspensions grown inside flasks. It was optimized for low production cost, simplicity, low power consumption, design flexibility, consistent, and controllable growth light intensity. The illuminated orbital shaker is especially well suited for low-resource research laboratories and education. It is an alternative to commercial instruments for microalgae cultivation. It improves on typical do-it-yourself microalgae growth systems by offering consistent and well characterized illumination light intensity. The illuminated growth area is 20 cm x 15 cm, which is suitable for three T75 tissue culture flasks or six 100 ml Erlenmeyer flasks. The photosynthetic photon flux density, is variable in eight steps (26 - 800 mol {middle dot} m-2 {middle dot} s-1) and programmable in a 24-hour light/dark cycle. The agitation speed is variable (0 - 210 RPM). The overall material cost is around {pound}300, including an entry-level orbital shaker. The build takes two days, requiring electronics and mechanical assembly capabilities. The instrument build is documented in a set of open-source protocols, design files, and source code. The design can be readily modified, scaled, and adapted for other orbital shakers and specific experimental requirements. The instrument function was validated by growing fresh-water microalgae Desmodesmus quadricauda and Chlorella vulgaris. The cultivation protocols, microalgae growth curves, and doubling times are included in this report. Specifications table O_TBL View this table: org.highwire.dtl.DTLVardef@23c347org.highwire.dtl.DTLVardef@1e96f84org.highwire.dtl.DTLVardef@985cb5org.highwire.dtl.DTLVardef@ee9a76org.highwire.dtl.DTLVardef@dee9ab_HPS_FORMAT_FIGEXP M_TBL C_TBL

cell biology↗