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Nadimi, M.

Publications and source records attributed to Nadimi, M..

2 recordsLinked to original sources

Impact of Axon Model Complexity on Deep Brain Stimulation: A Comparative Analysis of MRG and Cohen Double-Cable Models

Deep brain stimulation (DBS) modeling relies heavily on biophysical neuron models to estimate neural activation thresholds and predict stimulation spread. In this study, we systematically compared a widely adopted axon model, the McIntyre-Richardson-Grill (MRG) model (Model I), with a more detailed biophysical model, the Cohen model (Model II), to assess how structural and electrophysiological differences affect predicted DBS outcomes. Electric field distributions generated by 2202 DBS lead were applied to the neuron models as extracellular input stimuli. Both models were simulated under biphasic pulse stimulation across varying axon-electrode distances, pulse widths, and stimulation frequencies. Activation distances ranged from approximately 2 to 10 mm depending on stimulation parameters and contact location. At 2 mA, Model I achieved an activation distance of 6 mm, whereas Model II reached 10 mm, indicating greater excitability. Across matched fiber tracts, threshold differences ranged from -1.40 mA to 0.27 mA, with Model II requiring lower thresholds in 97.7% of cases. Both models showed a strong inverse relationship between pulse width and activation threshold. However, frequency responses differed: Model II exhibited increasing thresholds at higher frequencies, while Model I showed a slight decrease. Machine learning regressors trained on distance, pulse width, and frequency achieved high predictive accuracy, with Gradient Boosting performing best. Model II demonstrated superior prediction metrics (R^2 = 0.986; RMSE = 0.045 mA; MAE = 0.034 mA) compared to Model I (R^2 = 0.977; RMSE = 0.089 mA; MAE = 0.068 mA). Overall, both models reliably estimate DBS-induced activation, but structural differences significantly affect excitability and frequency-dependent behavior. With appropriate awareness of their respective strengths and limitations, either model can be used to derive activation distances for estimating electric field isolevels and the volume of tissue activated in patient-specific DBS simulations.

biophysics↗

Generalizable Cysteine Quantification in Pea Cultivars from SERS Spectra Using AI

Rapid quantification of sulfur-containing amino acids, particularly cysteine, in legumes is critical for assessing nutritional quality, supporting breeding program screening, and ensuring consistency in quality control processes. However, conventional methods, such as high-performance liquid chromatography (HPLC), are time-consuming and resource-intensive for high-throughput applications. This study evaluated artificial intelligence models for predicting cysteine concentration from surface-enhanced Raman spectroscopy (SERS) spectra of pea extracts. SERS spectra were acquired from 20 cultivars grown at three geographically distinct locations, with HPLC-measured cysteine concentrations as a ground truth reference. Linear regression, partial least squares regression, support vector regression, random forest regression, and a one-dimensional convolutional neural network (1D-CNN) were compared using within-cultivar splits and leave-one-cultivar-out (LOCO) evaluation. The 1D-CNN achieved RMSE 0.008 g/100 g within cultivars and maintained performance under LOCO, while other models showed limited generalization. Shapley Additive Explanations highlighted informative bands in the 630-760 cm-1 range, and noise modeling optimized scan-count selection.

bioengineering↗