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NEGRE, N.

Publications and source records attributed to NEGRE, N..

2 recordsLinked to original sources

Parent-of-origin effect on global gene expression and host-plant adaptation in Spodoptera frugiperda (Lepidoptera: Noctuidae)

Spodoptera frugiperda (Fall armyworm, FAW), is a major pest that adapt to many host plants and cause significant economic losses. There are two genetically differentiated FAW strains with different food preferences, the "corn strain" (SfC) and the "rice strain" (SfR). Large transcriptional differences between the strains have been previously documented, which suggested a shift in metabolic homeostasis. In this study, we investigated how parental inheritance can influence FAW metabolism by comparing the larval performance as well as gene expression between FAW strains and their reciprocal hybrids. We recorded life history traits of these genotypes, including larval weight and larval survival rate, when reared on artificial diet or on corn leaves. We observed a previously documented heterosis effect with hybrids gaining more weight than parental lines on both diets. With corn diet, we also observed a significant maternal influence on fitness between the hybrids. We then performed whole genome sequencing and RNA-sequencing on individuals from the same artificial rearing conditions to correlate these differences in fitness with variations on gene expression. We found that the heterosis effect is potentially associated with differentially expressed genes predominantly engaged in immune response and metabolism. The two different hybrid genotypes differed in the expression of RNA gene silencing and oxidative phosphorylation, suggesting a strong effect of parent-of-origin variations on global metabolic homeostasis, as well as a potential involvement of transposable element silencing in compatibilities between the FAW strains genomes, which might explain the differences in FAW plant adaptation.

genomics↗

H3K9me2 genome-wide distribution in the holocentric insect Spodoptera frugiperda (Lepidoptera: Noctuidae)

BackgroundEukaryotic genomes are packaged by Histone proteins in a structure called chromatin. There are different chromatin types. Euchromatin is typically associated with decondensed, transcriptionally active regions and heterochromatin to more condensed regions of the chromosomes. Methylation of Lysine 9 of Histone H3 (H3K9me) is a conserved biochemical marker of heterochromatin. In many organisms, heterochromatin is usually localized at telomeric as well as pericentromeric regions but can also be found at interstitial chromosomal loci. This distribution may vary in different species depending on their general chromosomal organization. Holocentric species such as Spodoptera frugiperda (Lepidoptera: Noctuidae) possess dispersed centromeres instead of a monocentric one and thus no observable pericentromeric compartment. To identify the localization of heterochromatin in such species we performed ChIP-Seq experiments and analyzed the distribution of the heterochromatin marker H3K9me2 in the Sf9 cell line and whole 4th instar larvae (L4) in relation to RNA-Seq data. ResultsIn both samples we measured an enrichment of H3K9me2 at the (sub) telomeres, rDNA loci, and satellite DNA sequences, which could represent dispersed centromeric regions. We also observed that density of H3K9me2 is positively correlated with transposable elements and protein-coding genes. But contrary to most model organisms, H3K9me2 density is not correlated with transcriptional repression. ConclusionThis is the first genome-wide ChIP-Seq analysis conducted in S. frugiperda for H3K9me2. Compared to model organisms, this mark is found in expected chromosomal compartments such as rDNA and telomeres. However, it is also localized at numerous dispersed regions, instead of the well described large pericentromeric domains, indicating that H3K9me2 might not represent a classical heterochromatin marker in Lepidoptera.

genomics↗