bioRxiv Science⌕ Search

Biology subjects

Morozov, S.

Publications and source records attributed to Morozov, S..

8 recordsLinked to original sources

Aerobic scope is sustained through a heatwave in juvenile Atlantic salmon

Aquatic ectotherms are vulnerable to heatwave-induced physiological stress, which arises from increased energy demands and reduced dissolved oxygen content in warmer waters. Understanding thermal physiology is critical for predicting how commercially and ecologically important populations could be affected by the increasing risk of rising temperatures. Heatwave risk assessments often examine extremities of time scales: immediate impacts or long-term consequences. However, little is known about how consistently increasing mid-term thermal stress shapes aerobic performance in commercially important species such as Atlantic salmon (Salmo salar), which may face heat stress in rivers, especially at the juvenile life stage. By measuring how salmon juveniles manage their aerobic capacity at 16, 19 and 22{degrees}C using intermittent respirometry, we test if their thermal performance curve shows a decline at temperatures commonly occurring during heatwaves. Whole-animal metabolism was measured from control individuals kept at 16 {degrees}C before and after the heatwave, and after 4-5 days exposure at 19 and 22{degrees}C during the heatwave. We show that standard metabolic rate increases with temperature, but maximum metabolic rate and aerobic scope do not change between these temperatures. These findings suggest that juvenile Atlantic salmon may have limited capacity to increase aerobic performance during moderate heatwaves, leaving them vulnerable to cumulative effects of oxygen limitation to vital functions such as growth and stress responses. As climate change intensifies, incorporating thermal performance curves into conservation strategies can be utilized for predicting population resilience and informing effective management. Lay SummaryIn juvenile Atlantic salmon, standard metabolic rate increases but there is no difference in maximum metabolic rate and aerobic scope with increasing temperatures. Considering the increased metabolic costs of activities at higher temperatures, our results show that juvenile salmon are vulnerable to deteriorating performance at temperatures commonly experienced in present-day heatwaves.

physiology↗

Occurrence of plant-specific 4/1 gene in streptophyte algae: brief view on the gene and protein evolution

Previously, the plant-specific 4/1 proteins have been found to be encoded by single-copy genes in most land plants (clade Embryophyta) but not in green algae. We first identified and characterized 4/1 genes in arabidopsis (At-4/1) and tobacco (Nt-4/1). Importantly, the 4/1 proteins in Magnoliophyta species are characterized by a highly conserved C-terminal domain of 30-37 amino acids. In this paper, we report the analysis of 4/1 genes in streptophyte algae - ancestors of lower land plants. AUGUSTUS ab initio gene prediction was used to predict 4/1 protein-coding genes in the chromosomal DNA sequences of several algae from classes Mesostigmatophyceae, Klebsormidiophyceae and Zygnemophyceae. Interestingly, in contrast to an inronless 4/1-like gene previously found in another charophyte alga Chara braunii, these genes contain several introns that is consistent with the 4/1 exon-intron organization of land plants. In general, the chromosomes of the studied charophyte algae were found to encode Magnoliophyta-like 4/1 proteins that share their previously described general gene structure and protein properties. These new data on the 4/1-like genes and proteins in the Streptophyta clade suggest that 4/1 proteins are probably function as accessory factors in stress response, but these polypeptides are not required for the primary metabolic functions of streptophyte cells.

plant biology↗

ORIGIN OF THREE RELATED MOVEMENT GENE MODULES IN PLANT VIRUSES: EVOLUTIONARY RADIATIONS OF BENYVIRUS-LIKE RNA REPLICONS

Previous studies have shown that the RNA genomes of some plant viruses encode two related genetic modules required for the virus movement over host body, containing 2 or 3 genes and named as triple gene block (TGB) and binary movement block (BMB). In this paper, we revealed a novel related movement gene module, called Tetra-Cistron Movement Block (TCMB). It was found to be encoded by virus-like transcriptome assemblies of moss Dicranum scoparium and Antarctic flowering plant Colobanthus quitensis. These TCMBs are encoded by second RNA components of the putative two-component viruses related to plant benyviruses. Like RNA-2 of benyviruses, TCMB RNA-2 contains the 5-terminal coat protein gene. General organization of TCMB is very similar to TGB: it includes RNA helicase gene which is followed by two small overlapping cistrons encoding hydrophobic proteins with a distant sequence similarity to TGB2 and TGB3 genes. However, TCMB includes also forth 5-terminal gene coding for protein with an obvious similarity to double-stranded RNA-binding proteins belonging to the DSRM AtDRB-like superfamily. Finally, we suggest the proposed involvement of replicative beny-like helicases in evolution of the BMB and TCMB movement genetic modules.

microbiology↗

Standard metabolic rate does not associate with age-at-maturity genotype in juvenile Atlantic salmon

Atlantic salmon (Salmo salar) is a species with diverse life-history strategies, to which the timing of maturation contributes considerably. Recently, the genome region including the gene vgll3 has gained attention as a locus with a large effect on salmon maturation timing, and recent studies on the vgll3 locus in salmon have indicated that its effect might be mediated through body condition and accumulation of adipose tissue. However, the cellular and physiological pathways leading from vgll3 genotype to phenotype are still unknown. Standard metabolic rate is a potentially important trait for resource acquisition and assimilation and we hypothesized that this trait, being a proxy for the maintenance energy expenditure of an individual, could be an important link in the pathway from vgll3 genotype to maturation-timing phenotype. As a first step to studying links between vgll3 and the metabolic phenotype of Atlantic salmon, we measured the standard metabolic rate of 150 first year Atlantic salmon juveniles of both sexes, originating from 14 different families with either late maturing or early maturing vgll3 genotypes. No significant difference in mass-adjusted standard metabolic rate was detected between individuals with different vgll3 genotypes, indicating that juvenile salmon of different vgll3 genotypes have similar maintenance energy requirements in the experimental conditions used and that the effects of vgll3 on body condition and maturation are not strongly related to maintenance energy expenditure in either sex at this life stage. Summary statementWe show that vgll3, a gene known to have significant effects on Atlantic salmon (Salmo salar) life-history strategy, does not associate with standard metabolic rate in salmon juveniles.

genetics↗

Genetic coupling of life-history and aerobic performance in juvenile Atlantic salmon

A better understanding of the genetic and phenotypic architecture underlying life-history variation is a longstanding aim in biology. Theories suggest energy metabolism determines life-history variation by modulating resource acquisition and allocation trade-offs, but the genetic underpinnings of the relationship and its dependence on ecological conditions have rarely been demonstrated. The strong genetic determination of age-at-maturity by two unlinked genomic regions (vgll3 and six6) makes Atlantic salmon (Salmo salar) an ideal model to address these questions. Using more than 250 juveniles in common garden conditions, we quantified the covariation between metabolic phenotypes -standard and maximum metabolic rates (SMR and MMR), and aerobic scope (AS) - and the life-history genomic regions and tested if food availability modulates the relationships. We found that the early maturation genotype in vgll3 was associated with higher MMR and consequently AS. Additionally, MMR exhibited physiological epistasis; it was decreased when late maturation genotypes co-occurred in both genomic regions. Contrary to our expectation, the life-history genotypes had no effects on SMR. Further, food availability had no effect on the genetic covariation, suggesting a lack of genotype-by-environment interactions. Our results provide insights on the key organismal processes that link energy use at the juvenile-stage to age-at-maturity, indicating potential mechanisms by which metabolism and life-history can coevolve.

evolutionary biology↗

MiniFAST: A sensitive and fast miniaturized microscope for in vivo neural recording

Observing the activity of large populations of neurons in vivo is critical for understanding brain function and dysfunction. The use of fluorescent genetically-encoded calcium indicators (GECIs) in conjunction with miniaturized microscopes is an exciting emerging toolset for recording neural activity in unrestrained animals. Despite their potential, current miniaturized microscope designs are limited by using image sensors with low frame rates, sensitivity, and resolution. Beyond GECIs, there are many neuroscience applications which would benefit from the use of other emerging neural indicators, such as fluorescent genetically-encoded voltage indicators (GEVIs) that have faster temporal resolution to match neuron spiking, yet, require imaging at high speeds to properly sample the activity-dependent signals. We integrated an advanced CMOS image sensor into a popular open-source miniaturized microscope platform. MiniFAST is a fast and sensitive miniaturized microscope capable of 1080p video (1920x1080 pixels), 1.5 {micro}m resolution, frame rates up to 500 Hz (achieved with windowing: 1920 x 55 pixels height) and high gain ability (up to 70 dB) to image in extremely low light conditions. We report results of [~]300 Hz in vivo imaging of freely behaving transgenic Thy1-GCaMP6f mice, high speed 500 Hz in vitro imaging of a GEVI and in vivo GEVI imaging in head-fixed mice. Our results extend miniaturized microscope capabilities in high-speed imaging, high sensitivity and increased resolution, opening the door for the open-source community to use fast and dim neural indicators.

neuroscience↗

Coevolution between life-history and metabolic rate depends on ontogenetic stage

Metabolic rate is considered to determine the energetic investment placed into life-history traits, regulating the speed of an organisms life-cycle and forming the so called \"pace-of-life\". However, how metabolic rate and life-history traits co-evolve remains unclear. For instance, the energetic demands of life-history traits, including the number of energy allocation trade-offs, is unlikely to remain constant over ontogeny. Therefore, the predicted coevolution between metabolic rate and life-history could be specific to particular ontogenetic stages, rather than a stable property of an organism. Here, we test the ontogenetic dependency of the coevolution between metabolic rate and the pace of life-history, under strictly standardized conditions using 30 species of killifish, which are either annual species adapted to ephemeral pools or non-annual species inhabiting more permanent waterbodies. Standard metabolic rates were estimated at three ontogenetic stages, together with relevant life-history traits, i.e. growth (juveniles), maturity (young adults), and reproductive rate (reproductive adults). Life-history traits largely followed predicted pace-of-life patterns, with overall faster/higher rates in annual species. The divergences in life-history traits across species tended to increase over ontogeny, being smallest during juvenile growth and largest in reproductive adults. However, associations between life-history strategy and metabolic rate followed a reversed pattern, being strongest in juveniles, but lowest in reproductive adults. Our results are concordant with the number of energetic trade-offs increasing over ontogeny, which results in a stronger covariation between physiology and life-history traits earlier in ontogeny.

evolutionary biology↗

FishResp: R Package and GUI Application for Analysis of Aquatic Respirometry Data

Intermittent-flow respirometry is widely used to measure oxygen uptake rates and subsequently estimate aerobic metabolic rates of aquatic animals. However, the lack of a standard quality-control software to detect technical problems represents a potential impediment to comparisons across studies. Here, we introduce FishResp, a versatile R package and its graphical implementation for quality-control and filtering of raw respirometry data. Our goal is to provide a straightforward, cross-platform and free software to help improve the quality and comparability of metabolic rate estimates for reducing methodological fragmentation in the field of aquatic respirometry. FishResp accepts data from various respirometry systems, allows users to detect potential mechanical problems which can occur during oxygen uptake measurements (e.g. chamber leaking, poor water circulation), and offers six options to correct raw data for microbial oxygen consumption. The software performs filtering of raw data based on user criteria, and produces accurate and unbiased estimates of absolute and mass-specific metabolic rates. Using data from three-spined sticklebacks (Gasterosteus aculeatus) and Trinidadian guppies (Poecilia reticulata), we demonstrate the virtues of FishResp, highlighting the importance of detecting mechanical problems and correcting measurements for background respiration.\n\nLay summaryFishResp is a user-friendly tool for calculating oxygen uptake of aquatic organisms. The aim of the software is to improve the quality of metabolic rate estimates based on a straightforward pipeline: background respiration correction, detection of mechanical problems, conduction of QC tests, and filtration based on user-defined criteria.

physiology↗