Biology subjects

Moore, S. E.

Publications and source records attributed to Moore, S. E..

9 recordsLinked to original sources

bioRxiv2025

Characterising longitudinal dynamics of infant neurodevelopment using functional change point detection

SignificanceHabituation is an early-developing cognitive process linked to learning, typically reflected in functional near-infrared spectroscopy (fNIRS) studies as a reduction in evoked hemodynamic response amplitude. Conventional fNIRS analyses rely on linear time-invariance assumptions, potentially limiting insight into how responses evolve across repeated stimulus presentations. AimTo determine whether functional change point (FCPt) detection can characterize trial-specific changes in the infant hemodynamic response and reveal developmental differences in habituation timing. ApproachFunctional data analysis (FDA) treats entire response curves as statistical objects. Within this framework, FCPt detection identifies statistically significant structural shifts in the mean response across trials. FCPt detection with wild binary segmentation was applied to infant fNIRS data (n = 204) collected from infants living in rural Gambia at 5-, 8-, and 12-months of age during a habituation and novelty detection paradigm. ResultsSignificant changes were identified within auditory cortical regions. A high proportion of detected change points corresponded to decreases in response magnitude at 8- and 12-months. Ordinal regression revealed an age-related shift toward earlier occurrence of decreasing change points, indicating that older infants completed habituation sooner within the trial sequence. ConclusionFCPt detection provides temporal information on the infant hemodynamic response unavailable to conventional analysis. This additional information has revealed a previously overlooked developmental change in the habituation response during the first year of infancy.

neuroscience↗

bioRxiv2025

Investigating the effect of channel pruning on functional near-infrared spectroscopy data collected from children aged 5-24 months

SignificanceInfant functional near-infrared spectroscopy (fNIRS) data are particularly vulnerable to noise; participant behaviour can result in motion artefacts and reduced set-up times can cause poor optode coupling. Accurate channel pruning is therefore essential but approaches vary and often use adult-derived thresholds, risking unnecessary data loss. AimThis work systematically compared pruning approaches and parameter choices to evaluate their effects on data quality and retention in infant fNIRS. ApproachData from 5-24 month-old infants were collected across two cohorts, using two paradigms. Channel pruning was performed using the coefficient of variation (CV) and the Quality Testing of Near Infrared Scans (QT-NIRS) tool, varying key thresholds. Multilevel models assessed effects of pruning method, parameter choice, age, motion, and testing site on signal-to-noise ratio (SNR) and channels retained. ResultsQT-NIRS produced significantly higher SNR than CV pruning across nearly all age, task, and cohort combinations, when matched for data retention. Higher QT-NIRS thresholds improved quality but reduced retention. Motion prevalence strongly reduced both SNR and retention; testing site and age had smaller but notable effects. ConclusionsQT-NIRS offers a better balance of data quality and retention than CV pruning. Lower QT-NIRS thresholds than adult defaults are recommended for infant data. These findings provide practical guidance for preprocessing pipelines in developmental fNIRS research.

neuroscience↗

bioRxiv2025

Examining Cross-Paradigm fNIRS Brain Activity in Neonates across The Gambia and UK

SignificanceNeonates undergo rapid development, yet the examination of emerging brain markers across paradigms, cognitive domains and diverse global populations remains limited. AimThis study investigated whether brain responses at one-month-of-age could be interrogated across paradigms to offer deeper context-specific insights into neurodevelopment. ApproachFunctional near-infrared spectroscopy (fNIRS) was used to assess frontal and temporal brain responses during natural sleep in 181 Gambian (GM) and 58 UK infants during three auditory paradigms: Social Selectivity, Habituation and Novelty Detection (HaND) and Functional Connectivity (FC). Paradigm-level brain responses were analysed using threshold-free cluster enhancement and cross-paradigm comparisons of individual responses. ResultsAt the group level, both GM and UK infants showed habituation but not novelty responses, higher inter-versus intra-hemispheric connectivity, stronger inter-hemispheric connectivity in temporal regions relative to frontal regions, stronger inter-regional connectivity between right temporal and left frontal regions, and UK infants also showed non-vocal > vocal selectivity. ConclusionsCross-cohort differences in the cross-paradigm analyses suggest context-specific developmental markers are evident within the first month of life and show high individual variability. Cross-paradigm analyses revealed that greater vocal selectivity (UK) was associated with higher inter-hemispheric connectivity, potentially allowing us to identify biomarkers of more mature neurodevelopment within the first weeks of postnatal life.

neuroscience↗

bioRxiv2025

Effect of sleep stages on patterns of fNIRS hemodynamic response to auditory paradigms in one-month-old Gambian and UK infants

SignificanceFunctional near-infrared spectroscopy (fNIRS) has advanced our understanding of early brain development, especially infant responses to social and auditory stimuli. Unlike older children and adults, very young infants are often assessed during natural sleep to reduce movement and ensure sufficient data quality. Yet the impact of sleep stage on fNIRS signals and how it might affect interpretations of early brain activation patterns remains unclear. AimThis study investigates the effect of sleep stages on fNIRS-measured hemodynamic responses to two auditory paradigms across different global populations of one-month-old infants. ApproachIn total, 46 Gambian and 40 UK infants in quiet or active sleep were tested using (1) social selectivity and (2) a habituation and novelty detection paradigms. ResultsIn the UK cohort, active sleep was associated with a stronger initial response and greater habituation compared to quiet sleep. In contrast, Gambian infants in quiet sleep showed more widespread activation and evidence of habituation, while infants in active sleep showed no habituation. No sleep stage effects were observed for response in the social selectivity paradigm in either group. ConclusionsDifferent effects of sleep stages were observed across the two cohorts and paradigms and should be carefully considered in neuroimaging studies.

neuroscience↗

bioRxiv2025

Functional specialisation across the first five years of life: a longitudinal characterisation of social perception with fNIRS

Research in typically developing infants has shown robust and consistent brain activation to social versus non-social visual and auditory stimuli in a network of brain regions, including the inferior frontal, anterior temporal and posterior superior temporal cortex. However, large-scale, longitudinal neuroimaging studies across early childhood, particularly in low- and middle-income countries are rare, yet important, given that they offer a powerful means of capturing within-person changes in neurodevelopment and identifying targets for intervention and support. Here we investigated brain responses to social perception longitudinally across the first five years of life of participants in The Gambia with functional near-infrared spectroscopy (fNIRS) within the Brain Imaging for Global Health (BRIGHT) Project. We found that social visual stimuli elicited a selective right posterior temporal response across all six age points studied here (5, 8, 12, 18, 24 months and 3-5 years of age), with concurrent selective left responses at four of the six time points (5, 8, 18 months and 3-5 years of age). Inferior frontal regions showed brain activation at multiple ages, with the youngest (5 months) and oldest (24 months to 3-5 years) time points evidencing more widespread frontal social visual responses. Conversely, auditory social stimuli elicited a significantly stronger and more prolonged response than auditory non-social stimuli across all six age points from 5 months to 3-5 years across a range of frontal and temporal areas. Finally, from individual infant trajectories of brain activation, we identified different profiles of age-dependent specialisation to auditory social stimuli, with some specialising earlier than others. Future work could take advantage of such profiles to investigate the effects of adversity and resilience factors on neurodevelopment.

neuroscience↗

bioRxiv2025

Longitudinal Habituation and Novelty Detection neural responses from infancy to early childhood in The Gambia and UK

As infants and young children learn from and respond to their environment, their development is driven by their ability to filter out irrelevant stimuli and respond to salient stimuli. While sources and types of stimuli vary across cultural contexts, research to understand the neural mechanisms of these behaviors have largely focused on relatively homogeneous populations in high income settings. To address this lack of diverse representation the Brain Imaging for Global health project (BRIGHT) collected longitudinal data in The Gambia (N=204) and the UK (N=61). Here we present results of the Habituation and Novelty Detection (HaND) fNIRS neuroimaging task. Gambian infants showed persistent response suppression (Habituation) at all visits (from 5mo to 60mo) while Novelty Detection was only observed once infants reached 18 and 24mo. In the UK, infants only showed persistent habituation from 5-12mo, while the response was not evident at 18 and 24mo. Furthermore, in contrast to The Gambia, alongside the habituation patterns observed Uk infants showed novelty detection from 5-12mo. This is the first longitudinal description of the HaND response in individuals from different contextual backgrounds across such a broad age range and number of time points, revealing different patterns of specialization in The Gambia and UK. HighlightsO_LIThis is the first characterization of Habituation and Novelty Detection (HaND) responses in infants and young children from contrasting settings across low and high-income countries. C_LIO_LIIn the Gambian cohort, Habituation was typically observed from 5 to 60months; only weak patterns of Novelty Detection were observed at 18 and 24months. C_LIO_LIIn the UK cohort, HaND responses were observed up to 12months of age; but were not evident at 18 and 24months. C_LIO_LIDevelopmental trajectories of HaND responses follow different patterns of specialization from birth to five years of age in individuals living in different contexts. C_LI

neuroscience↗

bioRxiv2024

Growth in early infancy drives optimal brain functional connectivity which predicts cognitive flexibility in later childhood

Functional brain network organization, measured by functional connectivity (FC), reflects key neurodevelopmental processes for healthy development. Early exposure to adversity, e.g. undernutrition, affects neurodevelopment, observable via disrupted FC, and leads to poorer outcomes from preschool age onward. We assessed longitudinally the impact of early growth trajectories on developmental FC in a rural Gambian population from age 5 to 24 months. To investigate how these early trajectories relate to later childhood outcomes, we assessed cognitive flexibility at 3-5 years. We observed that early physical growth before the fifth month of life drove optimal developmental trajectories of FC that in turn predicted cognitive flexibility at pre-school age. In contrast to previously studied developmental populations, this Gambian sample exhibited long-range interhemispheric FC that decreased with age. Our results highlight the measurable effects that poor growth in early infancy has on brain development and the possible subsequent impact on pre-school age cognitive development, underscoring the need for early life interventions throughout global settings of adversity.

neuroscience↗

bioRxiv2022

DNA methylation at the suppressor of cytokine signaling 3 (SOCS3) gene influences height in childhood

Human height is strongly influenced by genetics but the contribution of modifiable epigenetic factors is under-explored, particularly in low and middle-income countries (LMIC). We investigated links between blood DNA methylation and child height in four LMIC cohorts (n=1927) and identified a robust association at three CpGs in the suppressor of cytokine signalling 3 (SOCS3) gene which replicated in a high-income country cohort (n=879). SOCS3 methylation (SOCS3m) - height associations were independent of genetic effects. Mendelian randomization analysis confirmed a causal effect of SOCS3m on height. In longitudinal analysis in a LMIC cohort, SOCS3m explained a maximum 9.5% of height variance in mid-childhood while the variance explained by height polygenic risk score increased from birth to 21 years (2% to 18%). Childrens SOCS3m was associated with prenatal maternal folate and socio-economic status. In-vitro characterization confirmed a regulatory effect of SOCS3m on gene expression. Our findings suggest that epigenetic modifications may play an important role in driving child height in LMIC.

genomics↗

bioRxiv2019

Environmentally sensitive hotspots in the methylome of the early human embryo

In humans, DNA methylation marks inherited from gametes are largely erased following fertilisation, prior to construction of the embryonic methylome. Exploiting a natural experiment of seasonal variation including changes in diet and nutritional status in rural Gambia, we analysed two independent child cohorts and identified 259 CpGs showing consistent associations between season of conception (SoC) and DNA methylation. SoC effects were most apparent in early infancy, with evidence of attenuation by mid-childhood. SoC-associated CpGs were enriched for metastable epialleles, parent-of-origin specific methylation and germline DMRs, supporting a periconceptional environmental influence. Many SoC-sensitive CpGs overlapped enhancers or sites of active transcription in H1 ESCs and fetal tissues. Half were influenced but not determined by measured genetic variants that were independent of SoC. Environmental hotspots providing a record of environmental influence at periconception constitute a valuable resource for investigating epigenetic mechanisms linking early exposures to lifelong health and disease.

genomics↗