bioRxiv Science⌕ Search

Biology subjects

Mohareb, F.

Publications and source records attributed to Mohareb, F..

2 recordsLinked to original sources

Prolonged heat stress in Brassica napus during flowering negatively impacts yield and alters glucosinolate and sugar metabolism

Oilseed rape (Brassica napus), one of the most important sources of vegetable oil worldwide, is adversely impacted by heat wave-induced temperature stress especially during its yield determining reproductive stages. However, the underlying molecular and biochemical mechanisms are still poorly understood. In this study, we investigated the transcriptomic and metabolomic responses to heat stress in B. napus plants exposed to a gradual increase of temperature reaching 30 {degrees}C in the day and 24 {degrees}C at night for a period of 6 days. High Performance Liquid Chromatography (HPLC) and Liquid Chromatography-Mass Spectrometry (LC-MS) was used to quantify the content of carbohydrates and glucosinolates respectively. RNA-Seq analysis of flower buds showed a total of 1892, 3253, 4553, 4165 and 1713 genes were differentially expressed at days 0, 1, 2, 6 and 12 after treatment respectively. Results showed that heat stress reduced yield and altered oil composition. Heat stress also increased the content of carbohydrate (Glucose, Fructose and Sucrose) and aliphatic glucosinolates (Gluconapin, Progoitrin) in the leaves but decreased the content of the indolic glucosinolate (Glucobrassicin). Heat treatment resulted in down regulation of genes involved in respiratory metabolism namely Glycolysis, Pentose Phosphate Pathway, Citrate Cycle and Oxidative Phosphorylation especially after 48 hrs of heat stress. Other down regulated genes mapped to sugars transporters, nitrogen transport and storage, cell wall modification and methylation. In contrast, up regulated genes mapped to small heat shock proteins (sHSP20) and other heat shock factors that play important roles in thermotolerance. Furthermore, two genes were chosen from the pathways involved in the heat stress response to further examine their expression using real time RT-qPCR. Taken together, the results of this study demonstrated that the changes in carbohydrates and glucosinolates metabolism and transport under heat stress is one of the response mechanisms employed by the plant under heat stress conditions. Moreover, the transcriptomic data will be useful for further understanding the molecular mechanisms of B. napus plant tolerance to heat stress and provide a basis for breeding heat-tolerant varieties.

plant biology↗

De novo genome assembly and functional annotation for Fusarium langsethiae

MotivationFusarium langsethiae is a T-2 and HT-2 mycotoxins producing Fusarium species firstly characterised in 2004. It is commonly isolated from oats in Northern Europe. T-2 and HT-2 mycotoxins exhibit immunological and haemotological effects in animal health mainly through inhibition of protein, RNA and DNA synthesis. The development of a high-quality and comprehensively annotated assembly for this species is therefore essential in providing the molecular understanding and the mechanism of T-2 and HT-2 biosynthesis in F. langsethiae to help develop effective control strategies. ResultsThe F. langsethiae assembly was produced using PacBio long reads, which were then assembled independently using Canu, SMARTdenovo and Flye; producing a genome assembly total length of 59Mb and N50 of 3.51Mb. A total of 19,336 coding genes were identified using RNA-Seq informed ab-initio gene prediction. Finally, predicting genes were annotated using the basic local alignment search tool (BLAST) against the NCBI non-redundant (NR) genome database and protein hits were annotated using InterProScan. Genes with blast hits were functionally annotated with Gene Ontology. Contactf.mohareb@cranfield.ac.uk Data availabilityRaw sequence reads and assembled genome can be downloaded from: GenBank under the accession JAFFKB000000000

genomics↗